Neofusicoccum parvum: UCRNP2_9865
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Entry
UCRNP2_9865 CDS
T03126
Name
(GenBank) putative small nuclear ribonucleo protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
npa
Neofusicoccum parvum
Pathway
npa03018
RNA degradation
npa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UCRNP2_9865
09123 Folding, sorting and degradation
03018 RNA degradation
UCRNP2_9865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npa03019
]
UCRNP2_9865
03041 Spliceosome [BR:
npa03041
]
UCRNP2_9865
Messenger RNA biogenesis [BR:
npa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
UCRNP2_9865
mRNA degradation factors
5'-3' decay
Lsm complex
UCRNP2_9865
Spliceosome [BR:
npa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
UCRNP2_9865
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
FoP_duplication
Motif
Other DBs
NCBI-ProteinID:
EOD43432
LinkDB
All DBs
Position
Unknown
AA seq
128 aa
AA seq
DB search
MSERGHFRGGRGGGRGGDRGGRGGGRGGHGGNQERPKKENILDLGKLMDKEICVKFNGGR
EVTGTLKGYDQLMNLVLDDVKEVMRDDEGNETTRTLGLTVARGTLLVLISPLDGSEEIAN
PFAPTEDE
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcgcgggcacttccggggcggccgcggaggcggcagaggcggcgatcgtggc
ggacgcggcggcggacgcggagggcacggcggcaatcaggaacgcccgaagaaggaaaac
atcctcgatctggggaagctcatggacaaggagatctgtgtcaagttcaacggcggtcgc
gaggtgaccggcacgctgaagggctacgatcagctcatgaacctggtgttggacgatgtg
aaggaagtcatgcgcgatgacgaaggcaacgaaaccacccgcaccctcggtctgactgtc
gcacgcggcactctgctcgtcctgatttcgccacttgacggcagcgaagagatcgccaat
ccctttgccccgacggaggacgagtga
DBGET
integrated database retrieval system
