Nocardioides panacisoli: KUV85_13920
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Entry
KUV85_13920 CDS
T08184
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
npc
Nocardioides panacisoli
Pathway
npc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUV85_13920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npc03019
]
KUV85_13920
03009 Ribosome biogenesis [BR:
npc03009
]
KUV85_13920
Enzymes [BR:
npc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KUV85_13920
Messenger RNA biogenesis [BR:
npc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUV85_13920
Ribosome biogenesis [BR:
npc03009
]
Prokaryotic type
rRNA helicases
KUV85_13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QYJ05844
LinkDB
All DBs
Position
2871925..2873604
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AA seq
559 aa
AA seq
DB search
MDETVTFADLGLGERILQSLAEVGYETPSPIQAETIPHLLAGRDVLGLAQTGTGKTAAFA
LPILDRLDVSRADAPQALVLAPTRELALQVSEAFERYAAHLPGVRLLPVYGGQGYGVQLS
ALRRGVHVVVGTPGRVMDHLDKGTLDLTQLEYLVLDEADEMLNMGFAEDVETILADTPAT
KQVALFSATMPKQIRKLSATYLNDPVEVAIERKTRTADNIAQRYLIVRYQQKVDALTRIL
EVENFDGMIVFVRTKHETETLAEKLRARGYSASAINGDVPQNVRERTVGQLKDSQLDILV
ATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHI
ERATKQPLTEMKQPSADEVNETRLARFDDKITEALESPQVGFFRDVVNHYIREHDVPEVD
VAAALAIVLHGDSPLLLEDEPEPPPRARDDRGPGGQGGRGKGGPRGKRGNGQPMATYKIA
VGKNQRVEPRQIVGAIANEGGLGRDDFGAITIRPDHSLVELPTHIPKEGWEKLKQTKIGG
KRINLKRDHGPPKGRKPRD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaccgtcacgtttgccgacctcggtctcggcgagcggatcctgcagtccctg
gccgaggtggggtacgagaccccgtcgccgatccaggccgagaccatcccgcacctgctc
gccgggcgcgacgtgctgggcctggcgcagaccggcaccggcaagaccgccgcgttcgcg
ctgccgatcctggaccggctcgacgtcagccgcgccgacgccccgcaggcgctcgtgctc
gccccgacccgcgagctcgcgctgcaggtgagtgaggcgttcgagcggtacgccgcgcac
ctgcccggcgtacgcctcctgccggtctacggcggccaggggtacggcgtccagctgtct
gcgctgcgccgcggcgtgcacgtcgtggtgggcaccccggggcgggtcatggaccacctc
gacaaggggacgctcgacctcacccagctggagtacctcgtgctcgacgaggccgacgag
atgctcaacatgggcttcgccgaggacgtcgagacgatcctggccgacaccccggccacc
aagcaggtggcgctgttctcggcgacgatgcccaagcagatccgcaagctctcggcgacc
tacctcaacgacccggtcgaggtcgccatcgagcgcaagacccgcacggccgacaacatc
gcccagcgctacctgatcgtgcgctaccagcagaaggtcgacgcgctgacccggatcctc
gaggtcgagaacttcgacgggatgatcgtcttcgtccgcaccaagcacgagaccgagacg
ctcgccgagaagctgcgggcccgcggctactcggcgtcggccatcaacggcgacgtgccg
cagaacgtccgcgagcgcaccgtcgggcagctgaaggactcccagctcgacatcctcgtc
gcgaccgacgtcgccgcccgcggcctggacgtggagcgcatcagtcacgtcgtgaactac
gacatccccaccgacaccgagtcctacgtccaccgcatcggccgcaccggccgcgccggg
cgcagcggcgacgcgatctccttcgtcactccgcgcgagcgttacctgctcaagcacatc
gagcgcgccaccaagcagccgctgaccgagatgaagcagcccagtgccgacgaggtcaac
gagacccggctcgcccgcttcgacgacaagatcaccgaggccctggagtcgccgcaggtc
ggcttcttccgcgacgtggtcaaccactacatccgcgagcacgacgtgcccgaggtcgac
gtcgcggccgcgctcgcgatcgtgctgcacggcgactcgccgctgctgctcgaggacgag
ccggagccgccgccgcgtgcgcgcgacgaccgtggccccggcggccagggtggtcgcggc
aagggcggtccgcgcggcaagcgcggcaacggccagccgatggcgacctacaagatcgcg
gtcggcaagaaccagcgcgtcgagccccgccagatcgtcggcgccatcgccaacgagggt
ggcctgggccgcgacgacttcggcgccatcacgatccgccccgaccactccctggtcgag
ctccccacccacatccccaaggagggctgggagaagctgaagcagaccaagatcggcggc
aagcggatcaacctcaagcgcgaccacggcccgccgaagggccgcaagccgcgcgactga
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