Nocardioides panacisoli: KUV85_14095
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Entry
KUV85_14095 CDS
T08184
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
npc
Nocardioides panacisoli
Pathway
npc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KUV85_14095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npc03019
]
KUV85_14095
03400 DNA repair and recombination proteins [BR:
npc03400
]
KUV85_14095
Enzymes [BR:
npc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUV85_14095
Messenger RNA biogenesis [BR:
npc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KUV85_14095
DNA repair and recombination proteins [BR:
npc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KUV85_14095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QYJ03449
LinkDB
All DBs
Position
2910347..2912455
Genome browser
AA seq
702 aa
AA seq
DB search
MSTTTATVRDRAEEHLRALVGREDVELYDDQWAAIEALAVDHRRALVVQRTGWGKSAVYF
IATLLLREAGSGPTVIISPLLALMRNQIDAARRAGIRAVTINSTNVEEWEETHAAIGRGE
VDVLLVSPERLNNPGFRDEVMPRLAATCGLLVIDEAHCISDWGHDFRPDYRRIRTLLGEL
PDGIPVLATTATANERVTEDVAEQMGAETLVQRGSLDRSSLRLGVVRLPTPEQRLAWLAD
HLTEQPGSGIIYCLTVAATQDVADYLRSRGHTVAAYSGQTEPTERHALEQSLLAGEVKAL
VATSALGMGFDATLGFVVNLGAPSSPVAYYQQVGRAGRGTADATVVLLPAVEDRDIWAYF
ASLAFPREEQVRHTLDVLAEEGRPMSTAMLETHVDLGRSRLETMLKVLDVDGAVRRVKGG
WEATGQPWEYDAERYRRVAEAREREQRAMLDYTATDQCRMWFLRDQLDDPEAAACGRCDN
CGGLAVPTSIDAAAVAAAEERLQRPGVPIQPRRMWPTALANLGLDLKGKIREPAAEGRAI
ARLTDLGHGQALRELFRTPGAAADDTGGTPQAVPTGLVRAMVAVLEDWRPGVDAIVCVES
ATRPALVRDLADGLSRYLGVPVVGEFAIVDPDVAPEQGATNSAQRIAAVRRRFALRGEVP
DGARVLLVDDRVGTGWTLTVATQDLRGAGAAEVHPLALALTS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccaccgccaccgtccgcgaccgtgccgaggagcacctgcgcgccctggtc
gggcgtgaggacgtcgagctgtacgacgaccagtgggccgccatcgaggcgctcgcggtc
gaccaccgccgggcgctggtggtgcagcgcaccgggtggggcaagtcggcggtctacttc
atcgccacgctgctgctgcgtgaggccggctcgggaccgacggtgatcatctcgccgctg
ctcgccctgatgcgcaaccagatcgatgccgcccggcgggccggcatccgcgccgtgacc
atcaactccaccaacgtcgaggagtgggaggagacccacgccgcgatcggccgcggcgag
gtcgacgtgctgctggtgagcccggagcggctcaacaaccccggcttccgcgacgaggtc
atgccgcgcctggccgccacctgcgggctgttggtcatcgacgaggcccactgcatctcc
gactggggccacgacttccggcccgactaccgccgcatccgcaccctgctcggtgagctg
cccgacgggatccccgtgctggccaccacggcgacggccaacgagcgggtcaccgaggac
gtcgccgagcagatgggcgccgagaccctcgtgcagcgcggctcgctggaccggtcctcg
ctgcggctgggcgtcgtacgcctgcccacgccggagcagcggctcgcgtggctcgccgac
cacctgaccgagcagcccggcagcggcatcatctactgcctcaccgtcgccgcgacccag
gacgtcgccgactacctccgctcccgtgggcacaccgtggcggcgtactccgggcagacc
gagccgaccgagcgccacgcgttggagcagtcgctgctcgccggtgaggtcaaggcgctg
gtcgccaccagcgcgctcggcatgggcttcgacgccacgctgggcttcgtggtcaacctg
ggcgccccgagctcgccggtggcctactaccagcaggtcggccgtgccggccgcggcacg
gccgatgccacggtggtgctgctgccggcggtcgaggaccgcgacatctgggcctacttc
gcctccctcgccttcccgcgcgaggagcaggtccgccacaccctcgacgtgcttgccgag
gagggacggccgatgagcaccgcgatgctcgagacccacgtcgacctgggccgcagtcgc
ctggagacgatgctgaaggtcctcgacgtcgacggcgcggtccggcgggtcaagggcggt
tgggaggcgaccggccagccctgggagtacgacgccgagcgctaccgccgcgtcgcggag
gcccgcgagcgcgagcagcgcgcgatgctcgactacaccgccaccgaccagtgccgcatg
tggttcctgcgcgaccagctcgacgaccccgaggccgcggcctgcgggcggtgcgacaac
tgcggcggactggccgtgcccaccagcatcgacgccgccgcggtggccgccgccgaggag
cggctgcagcgccccggcgtcccgatccagccgcggcgcatgtggccgacggcgctggcc
aacctcggcctggacctcaagggcaagatccgcgagcccgctgccgagggccgcgccatc
gcccgcctcaccgacctcggacacggccaggcgctccgcgagctcttccggaccccgggc
gcggccgcggacgacaccggggggaccccgcaggcggtgccgaccggcctggtccgcgcc
atggtggcggtgctggaggactggcggcccggagtggacgccatcgtgtgcgtggagtcc
gcgacccggccggcgctggtccgcgaccttgccgacggtctctcgcgctacctcggcgtg
cccgtggtgggggagttcgccatcgtcgaccccgacgtcgcgcccgagcagggagcgacc
aactccgcccagcgcatcgccgccgtacgccgccgcttcgcgctgcgtggcgaggtgccg
gacggcgcgcgggtgctgctggtcgacgaccgcgtgggcaccggctggaccctcaccgtc
gccacccaggacctccggggcgcgggagccgccgaggtccacccgctcgcgctcgcgctc
accagctag
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