Nocardioides panacisoli: KUV85_16265
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Entry
KUV85_16265 CDS
T08184
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
npc
Nocardioides panacisoli
Pathway
npc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KUV85_16265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npc03021
]
KUV85_16265
03400 DNA repair and recombination proteins [BR:
npc03400
]
KUV85_16265
Enzymes [BR:
npc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KUV85_16265
Transcription machinery [BR:
npc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KUV85_16265
DNA repair and recombination proteins [BR:
npc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KUV85_16265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
XRN_M
Motif
Other DBs
NCBI-ProteinID:
QYJ03855
LinkDB
All DBs
Position
3328105..3331983
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVNFFDQLQIGLAGADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITDVDKDARHRDLSSLESKIGQQRKMLEDRLNVAIEDRSQKLEAD
LAELEAEGAKADAKRKLKDGAEREMNQIRKRSEGEIARLEEVWETFRNLEVQDLMGDEML
YREMKGWFGKYFEGHMGATAIQKRLENFDIEAEVENLREVIANGKGQRKVRALKRLKVVE
AFRKTGNHPAGMVLGAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIISGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAK
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPSQDQVVGLYWLTTDREGEPGEGR
SFASAAEAIMAFDRKEITLQSRVRIRFPDIVPSDDVPAPEGWEAGTPATIETTLGRALFN
DTLPADYPYVNSEVGKKQLGAIINDLAERYDKVQVAASLDALKDAGFNWATWSGVTVSID
DVVTPDAKAEILSGYEEKAAKIQKQFERGLVTDDERRQELIEIWTEASSKVGAAMEEALP
DSNSIAMMVHSGGSGNMNQIRQVGAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTH
GARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGMVKQIGVATDGNVVKHEH
AETAAYARASAVDVPHPETGEVLVAAGDDLGDVKIDQLVEAGITEVTVRSVLTCDARTGT
CAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVV
ELFEARTPKGVAPITEVAGRVEIEETDKARIVKITPDDGSDVMEYQVNRRSRLEVADGQH
VEVGQMLTAGTPDPKEVLRILGPKKTQQHLVDEVQEVYRSQGVSIHDKHIEIIVRQMLRR
ITVLESGDTTLLPSDLVDRVLFEEQNRRAVSEGGKPASGRPELMGITKASLATDSWLSAA
SFQETTRVLTDAAINGRSDSLRGLKENVIIGKLIPAGTGLERYRSIRVEPTEEARQAAYA
VTGYDSYDYEFGDAAGSQAVALDDFDFGSYQS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtcaacttcttcgaccagctccagatcggcctcgcaggcgcggacgacatc
cgcacctggagccacggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagcgtgacggcctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcggtgcggcgtg
gaggtcacccgctccaaggtgcgtcgtgagcggatgggccacatcgagctcgccgccccg
gtgacccacatctggtacttcaagggtgtgccgagccggctcggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcaccgacgtcgac
aaggacgcgcgccaccgcgacctgtcctcgttggagagcaagatcggccagcagcgcaag
atgctcgaggaccgcctcaacgtggccatcgaggaccgcagccagaagctcgaggccgac
ctggccgagctcgaggccgagggtgcgaaggccgacgccaagcgcaagctcaaggacggc
gccgagcgggagatgaaccagattcgcaagcgctccgagggcgagatcgcgcgcctggag
gaggtctgggagaccttccgcaacctcgaggtccaggacctcatgggcgacgagatgctc
taccgcgagatgaagggctggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctggagaacttcgacatcgaggccgaggtcgagaacctccgcgaggtc
atcgccaacggcaagggtcagcgcaaggtccgcgccctcaagcgcctcaaggtcgtcgag
gccttccgcaagaccggcaaccaccccgccggcatggtgctcggcgcggtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgcctgctcgacctc
ggtgcgccggagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgactcg
ctgttcgacaacggtcgtcgcggtcgtcccgtcaccggcccgggcaaccggccgctgaag
tcgctctcggacatgctcaagggcaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatctccggtccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctgtcgcacgcgcagaacatcaagtccgccaagcggatggtcgagcgcgccaag
ccggtcgtgtgggacgtcctggaagaggtcatcaccgagcacccggtgctgctcaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctggtgtgcggcgcgttcaacgccgacttcgacggtgaccag
atggcggtccacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tcgaccaacaacatcctcaagccctccgacggccgtccggtgacgatgccgtcgcaggac
caggtcgtgggcctgtactggctcaccaccgaccgcgagggtgagcccggcgagggtcgt
tcgttcgcctcggccgccgaggcgatcatggccttcgaccgcaaggagatcacgctgcag
tcgcgggtccggatccgcttccccgacatcgtcccctccgacgacgtccccgcccccgag
ggctgggaggccggtacgccggcgacgatcgagacgaccctgggccgggcgctgttcaac
gacacgctccccgcggactacccgtacgtgaactccgaggtcggcaagaagcagctgggc
gcgatcatcaacgacctcgccgagcgctacgacaaggtgcaggtcgccgcctcgctggac
gcgttgaaggacgcgggcttcaactgggccacctggtccggtgtcaccgtctccatcgac
gacgtcgtcacgcccgacgcgaaggccgagatcctctccggctacgaggagaaggccgcc
aagatccagaagcagttcgagcgcggactcgtcaccgacgacgagcgccgccaggagctc
atcgagatctggaccgaggcgtcctccaaggtgggtgctgcgatggaggaggcgctgccc
gacagcaactccatcgcgatgatggtccactccggcggttcgggaaacatgaaccagatc
cgtcaggtcggcgccatgcgaggcctggtggccaacccgaagggcgagatcatcccgcgg
ccgatcaaggcgaacttccgcgagggcctctcggtgctggagtacttcatctccacccac
ggtgcccgcaagggtctcgccgacaccgcgctgcggaccgccgactccgggtacctcacc
cgtcgtctggtcgacgtctcgcaggacgtcatcatccgtgaggacgactgcggcaccgag
cgcggcatggtcaagcagatcggtgtcgccaccgacgggaacgtggtcaagcacgagcac
gccgagaccgcggcgtacgcccgtgcctcggccgtggacgtgccccaccccgagaccggc
gaggtgctggtcgcggcgggtgacgacctgggcgatgtcaagatcgaccagctggtcgag
gcgggcatcaccgaggtgaccgtgcgttcggtgctcacctgtgacgcccgcaccggtacc
tgcgcgaagtgctacggccgctcgctggccaccggcaagctggtcgacatcggtgaggcg
gtcggcatcatcgcggcccagtccatcggtgagcccggcacgcagctgacgatgcggacc
ttccacaccggtggtgtggcctccgccgacgacatcacgcagggtctgccccgtgtggtc
gagctgttcgaggcgcgcacccccaagggtgtcgccccgatcaccgaggtcgccggccgg
gtcgagatcgaggagaccgacaaggcgcggatcgtcaagatcacgcccgacgacggctcc
gacgtcatggagtaccaggtcaaccgccgctcgcggctcgaggtggccgacggccagcac
gtcgaggtcggccagatgctgaccgccggtacccccgaccccaaggaggtcctgcggatc
ctgggtccgaagaagacccagcagcacctggtggacgaggtccaggaggtctaccgcagc
cagggcgtgtcgatccacgacaagcacatcgagatcatcgtgcggcagatgctgcgccgg
atcaccgtgctggagtcgggtgacaccacgctgctgccctcggacctggtcgaccgggtc
ctcttcgaggagcagaaccgtcgcgcggtctccgagggcggcaagccggcctcgggtcgt
cccgagctcatgggcatcaccaaggcctcgctcgcgacggactcgtggctctcggcggcc
tccttccaggagaccacccgggtgctcaccgacgccgcgatcaacggtcgctccgacagc
ctgcgtggcctgaaggagaacgtgatcatcggcaagctgatcccggcgggcaccggcctg
gagcgctaccgcagcatccgcgtcgagccgaccgaggaggcccggcaggcggcgtacgcc
gtcaccggctacgactcctacgactacgagttcggcgacgctgcgggcagccaggccgtg
gcactggacgacttcgactttggttcctaccagagttga
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