Nocardioides panacisoli: KUV85_16945
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Entry
KUV85_16945 CDS
T08184
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
npc
Nocardioides panacisoli
Brite
KEGG Orthology (KO) [BR:
npc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npc03019
]
KUV85_16945 (hrpA)
Enzymes [BR:
npc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KUV85_16945 (hrpA)
Messenger RNA biogenesis [BR:
npc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KUV85_16945 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
AAA_30
T2SSE
ResIII
NACHT
SLFN-g3_helicase
AAA_16
HA2_N
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
QYJ03987
LinkDB
All DBs
Position
3466163..3470050
Genome browser
AA seq
1295 aa
AA seq
DB search
MKITYPPELPVSDRREDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELERGLEGRRIGH
TQPRRIAARSVAERIASELGTDLGDAVGYQVRFTDKTSPRSRIKLMTDGILLAELQHDRS
LAKYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKLVITSATIDPERFAEHFAAADGT
PAPIIEVSGRTYPVEVRYRPLVEYADGIDGGGGVDGVDGEGETYVRDQTEAIGDAVKELA
AEGPGDVLVFLPGEREIRDTAEALEGLEGIDRGGIDVLPLFSRLSATEQHRVFKPSPGGR
RRVVLATNVAETSLTVPGIRYVVDTGVARISRYSARTKVQRLPIEPISQASANQRSGRCG
RVAAGIAIRLYSEEDFAGRPEFTDPEILRTNLASVMLQMANLGLGSMERFPFVEPPDRRN
VKAGDQLLEELGALRSGRDGGGARRLSKVGKRLARLPVDPRLGRMLVEAERLGCVREVVV
IVAALSLQDPRERPEEQRAQADQLHARFKADGSDFLTLLNLWRHLREQQRERSGSAFRRM
CRAEHLNYLRVREWQELEAQLRQVCKEMGIRLGPPTGLDKDGSSGTAVDADGIHQALLAG
LLSHVGMREEREKPPPGARAKGRKRPGPREYLGARGAKFALFPGSGLARQNPPFVMAAEL
VETSRLWARQNAEIRPEWAERLGAHLVKRTYSEPAWSQKRASVTARERVTLYGVPLVTDR
MVTYGRIDRELSRELFIRHALVYGEWRTRHQFFHDNRRLLAEAEELEHRARRRDLVVDEH
TLFDFYDARIGAEVVSGAHFDQWWKQVRRERPDLLTFDPAMLTHDTAEEVADADYPDQWV
SEGLTFDLRYHFEPGAAEDGVTVDVPVGTLNRIGDEDFSWHVPGLREELVTQLLRGLPKQ
LRVNFVPAPNTSREFLAATPPGEEPLLTALERYLRATTGVVVPREEWDVAALPAHLRPTY
RVVDERGEEQARGKDLDALKAPLRGEFAQAMAEVASDSGVARTGETTWAFGEIDDEATWT
RAGHEVAAHPGLVDEGATVGLEVFGSADERDARHRLGVARLLLLDLASTTGFGAGSDDAI
VGALAPAAKLALAGTPYPSVAALLTDCRRAVVLDAVDARPPVRTEAQYAALRDALAATAA
DELQVVLAEVLRVLERWRETDKLLSGRAEMALLPALSDMQAQLGRLVHDGFIGEAGLARL
RRVPTHLAAIEKRRAKLDQGGGAVRRDQELLDQLQPVQEAYLHRVAALPDGRPPGIGLRR
VRWLLEEYRVSLWAPELGTAEKVSDVRLRRALDDA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatcacctatccgcccgagctgcccgtcagtgaccgccgcgaggacatcgcggcg
gcgatccgcgatcaccaggtggtgatcgtcgcgggggagaccgggtcgggcaagaccacg
cagctgcccaagatctgcctcgagctcgagcgcggtctcgagggccgccgcatcggccac
acccagccgcgtcgcattgccgcccgctcggtcgccgaacgcatcgccagcgagctcggc
accgacctgggcgacgccgtcggctaccaggtccgcttcaccgacaagacctccccgcgc
agccgcatcaagctgatgaccgacggcatcctgctggccgagctgcagcacgaccggtcg
ctggcgaagtacgacacgatcatcatcgacgaggcccacgagcgcagcctcaacatcgac
ttcctgctgggctacctgcgccagctgctgccccggcggcccgacctcaagctcgtcatc
acctcggccaccatcgaccccgagcggttcgccgagcacttcgcggcggcggacggcacg
ccggccccgatcatcgaggtctccggccgcacctaccccgtcgaggtccgctaccgaccg
ctcgtggagtacgccgacggcatcgacggcggaggcggtgtggacggcgtcgacggggag
ggcgagacctacgtccgcgaccagaccgaggcgatcggcgacgcggtcaaggagctcgcc
gccgagggccccggggacgtcctggtcttcctgcccggcgagcgggagatccgtgacacc
gccgaggcgttggagggcctcgagggcatcgaccggggcggcatcgacgtactcccgctc
ttcagccggctctccgccaccgagcagcaccgcgtcttcaagccgtccccgggcggccgg
cgccgcgtcgtgctcgccaccaacgtcgccgagacctcgctgaccgtccctggcatccgg
tacgtcgtcgacaccggcgtcgcccgcatctcccgctactccgcgcgcaccaaggtgcag
cgcctgccgatcgagccgatcagccaggccagcgccaaccagcgttcgggccggtgcgga
cgcgtcgccgccggcatcgcgatccggctctactccgaggaggacttcgcggggcggccc
gagttcaccgaccccgagatcctgcgcaccaacctcgcctcggtgatgctgcagatggcc
aacctcgggctcggctcgatggagcggttcccgttcgtcgagcccccggaccggcgcaac
gtcaaggccggcgaccagctgctcgaggagctgggcgcgctgcgctcgggccgagatggt
ggcggggcccgccggctgtccaaggtcggcaagcggctcgcacgactgccggtcgacccg
cgactgggccggatgctcgtcgaggccgagcggctcggctgcgtgcgcgaggtcgtggtc
atcgtcgccgcgctctcgctgcaggacccccgcgagcggcccgaggagcagcgggcgcag
gccgaccagctccacgcccggttcaaggccgacggctcggacttcctgaccctgctcaac
ctgtggcgccacctgcgcgagcagcagcgcgagcgctccggcagtgccttccggcggatg
tgtcgtgccgagcacctgaactacctgcgcgtgcgcgagtggcaggagctcgaggcgcag
ctgcggcaggtctgcaaggagatggggatccggctcgggcccccgaccggtctcgacaag
gacggctcgagcggcacggcggtggatgcggacggcatccatcaggcgctgctcgccggg
ctgttgtcccacgtcgggatgcgtgaggagcgggagaagccgccgccgggcgctcgggcg
aaggggcgcaagcggcccgggccgcgggagtacctcggtgcccgcggtgcgaagttcgcc
ctcttccccggcagcggcctcgcccggcagaacccgccgttcgtgatggccgccgagctg
gtcgagaccagccggctgtgggcccggcagaacgccgagatccgccccgagtgggccgaa
cggctcggcgcccacctggtcaagcgcacctactccgagccggcctggtcccagaagcgc
gcctcggtcaccgcccgcgagcgggtgacgctgtacggcgtaccactggtcaccgaccgg
atggtcacctacggccgcatcgaccgggagctgtcgcgtgagctcttcatccgccacgcg
ctcgtctacggcgagtggcgcacccggcaccagttcttccacgacaaccggcgcctgctc
gccgaggccgaggagctcgagcaccgtgcccggcggcgcgacctcgtcgtcgacgagcac
accctgttcgacttctacgatgcccgcatcggcgccgaggtcgtcagcggtgcgcacttc
gaccagtggtggaagcaggtacgccgcgagcggcccgacctgctgaccttcgacccggcg
atgctcacccacgacacggccgaggaggtcgccgacgccgactatcccgaccagtgggtc
agcgagggcctcactttcgaccttcgctaccacttcgagcccggggcggccgaggacggc
gtcaccgtcgacgtccccgtcggcaccctcaaccgcatcggcgacgaggacttctcctgg
cacgtgcccggactgcgcgaggagctcgtcacccagctgctgcggggactgcccaagcag
ctgcgggtcaacttcgtgcccgcccccaacacctcgcgggagttcctcgcggcgacgccg
ccgggggaggagccgctgctcaccgcgctcgagcgctacctgcgcgccacgaccggcgtc
gtggtgccgcgtgaggagtgggacgtcgccgcgctgccggcgcacctgcgtcccacctac
cgcgtcgtcgacgagcgcggcgaggagcaggcccgcggcaaggatctcgacgcgctcaag
gcgccgctgcggggcgagttcgcccaggccatggccgaggtcgccagtgacagcggcgtc
gcccgcaccggcgagaccacgtgggccttcggcgagatcgacgacgaggccacctggacc
cgcgccgggcacgaggtcgccgcccaccccggcctggtcgacgagggcgccaccgtcggg
ctggaggtcttcggatccgccgacgagcgcgacgcccgccaccgcctcggcgtggctcgg
ctgttgctgctggacctcgcgtcgacgacggggttcggcgcgggcagcgacgacgcgatc
gtgggcgcgctcgcaccggcggcgaagctggcgctggccgggacgccgtacccctcggtc
gccgcgctgctcaccgactgccgacgcgccgtcgtcctcgacgcggtcgacgcgcggccg
ccggtccgcaccgaggcgcagtacgccgccctgcgtgatgcgctcgccgccaccgccgcc
gacgagctgcaggtcgtgctcgcggaggtgctgcgcgtcctggagcggtggcgcgagacc
gacaagctgctctccgggcgggccgagatggcgctgctgccggccctgtcggacatgcag
gcccagctcgggcggctcgtccacgacggcttcatcggcgaggcggggctggcgcggctg
cggcgcgtcccgacccacctcgccgcgatcgagaagcgccgcgccaagctcgaccagggc
ggcggcgccgtacgccgcgaccaggagctgctcgaccagctgcagccggtgcaggaggcc
tacctccaccgcgtcgccgcgctgccagacggcaggccgcccggtatcggcctgcggcgg
gtccggtggctgctggaggagtaccgcgtctcgctgtgggcgcccgagctcgggacggcg
gagaaggtcagcgacgtgcgcctgcgccgcgcgctggacgacgcctga
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