Nothoprocta perdicaria (Chilean tinamou): 112944559
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Entry
112944559 CDS
T07556
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04510
Focal adhesion
npd04512
ECM-receptor interaction
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112944559 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112944559 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112944559 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npd04147
]
112944559 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112944559 (COL4A5)
Exosome [BR:
npd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112944559 (COL4A5)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112944559 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112944559
NCBI-ProteinID:
XP_025891805
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
MEPPPRQRWRWRSRSLAAGCLVLLLGCWGQEEVAAAACHGCTSVSKCDCSGVKGEKGERG
FPGLEGQPGLPGFPGPEGPPGPRGMKGDDGLPGPIGPKGIRGPPGLPGFPGTPGLPGLPG
QDGPPGPHGVPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGEPGEIITSLLPGQKG
DPGFPGLPGIPGPPGSMGIPGPTGPPGPPGLTGPPGPPGLPGPKGNMGLNFQGPKGEKGE
QGLQGPPGPPGQIGEQKRPNDIEFQKGDQGIPGDPGPPGLPGPQGPPGLPGGVKGEKGEQ
GEPGKRGKPGKDGDPGQSGLDGLPGEPGVNGAPGRDGEKGEKGDTGPPGPPGTVISRPGI
DAAVGPKGSKGFPGLPGAKGERGFSGRPGPPGLPGSPGITTVGPPGPPGLPGERGQKGDQ
GLPGVSIPGQPGLDGPRGSPGPPGPPGPPAPSVSPGEGLCEQGPPGPPGIPGQPGFMGER
GQKGDQGDTCFNCIGTGISGPPGERGPPGPPGSPGSPGFPGQKGEKGLLGLTGLVGPPGF
PGPPGAPGRPGPKGDPGDVLTSPRMKGDKGDPGFPGPPGLPGIDGTPGRDGLPGLPGPKG
EPGSVAFKGEMGIPGDPGIPGLPGDKGIPGPPGFGPQGSPGEKGIQGVSGRPGPPGVPGP
KGEPGQTITEPGVPGPPGPPGRNGDPGLPGDPGQPGQRGLPGIPGVKGEPGIPGIGLPGP
PGPKGFPGTPGPPGAPGTPGHPGLDGPPGPPGFPGQKGDRGFGVPGPPGSPGPPGLKGVQ
GPKGDTGFPGNPGLPGRAGFDGTPGPKGEPGPSGPPGLPGPPGIPGIGGQGPPGPPGLPG
PVGPPGSPGLQGIPGEKGDPGPPGFDIPGPPGDQGTPGYPGPPGLPGPQGSPGPPGRDGI
PGFPGAKGEMGVMGAPGPPGPPGTPGRNGLPGLKGNNGLPGQPGPPGPVGQKGIKGEPGL
PGPPGKVDPKQLGAKGEKGEPGVPGIPGLSGQKGYQGLPGDPGPPGLSGPPGAPGLPGIK
GETGLPGQPGPIGPPGLKGAMGEMGLPGPPGIKGSQGVGGRPGQPGPAGFPGLKGEKGDP
GLSDIGIPGPPGSKGDLGLPGYPGSPGSKGIAGNPGLPGLPGNPGAKGEPGLPGFPGTPG
IPGPKGIEGPPGNPGLPGPPGPVGDVGRPGSPGLPGEKGQPGRDGIPGPAGQKGEPGLPG
FGRPGPPGLPGLSGQKGELGLPGPPGPPGLPGLKGEPGFQGFPGLQGPPGPPGLPGPPLE
GPKGSPGPQGVPGRPGPSGPPGPPGPEGPRGPPGSGALKGEKGNPGQPGPPGLSGQKGDQ
GSPGRQGDPGRPGLNGMKGDPGVPGVPGFPGMKGPPGPAGPAGLTGSQGLPGPPGPPGLP
GSIGRSIVVKGDPGPPGPPGQPGSKGPPGLPGPQGLPGPIGLPGDPGRDGLPGFDGPAGR
KGERGLPGQPGSRGTQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTRDTPLCPQGTLR
IYDGFSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNYASRNDYSYWLSTP
EPMPMSMEPLTGQSIQPFISRCVVCEAPAMVIAVHSQTIQIPSCPPGWDSLWIGYSFMMH
TSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEVSEMFSKPQ
SETLKAGDLRTRISRCQVCMKKT
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atggagccgccgcctcggcagcgttggcgctggcggagccgtagcctggccgccggctgc
ctcgtgctgctgctgggctgctggggacaggaggaggtggcagcggcggcttgccatgga
tgtacatctgtatccaagtgtgactgcagcggagtaaaaggtgaaaagggtgaaagagga
ttcccaggcttggaagggcagccaggtttgcctgggtttccaggaccagaaggacctcct
ggtccaagaggcatgaagggtgacgatggacttccagggcctattggacccaaaggaatc
agaggacctccagggcttccaggatttccaggcacaccaggacttcctggattaccagga
caggacgggccaccaggacctcatggtgtgccaggatgcaatggaacaaagggagagcgt
ggattcccaggcagtccaggttttcctggtttacaagggcctcctggaccccctggcctg
ccaggtatgaagggtgaaccaggtgaaataattacatccttgctacctggacaaaagggt
gacccaggatttccaggtcttccaggaatacctggccctcctggctccatgggtatacca
ggtccaactggccctccagggcccccaggtttgacaggaccccctggtccaccagggctg
ccaggacctaagggtaatatgggtttgaacttccaaggacccaaaggtgaaaaaggtgag
cagggtcttcagggacctcctgggccaccaggacaaattggagaacagaagagaccaaat
gacattgagtttcagaaaggagatcagggtattccaggtgatccaggcccaccaggactt
cccgggccacaaggccctcctggtcttcccggtggtgtaaaaggtgaaaaaggtgagcaa
ggagaaccaggcaaaagaggaaagcctggcaaagatggagatcctggtcagtctggtcta
gatggtttacctggtgagcctggagtaaatggtgctccaggaagagatggtgaaaagggt
gaaaaaggtgacactggtcctcctggtcctcctggaactgtcatttcaagaccaggcatt
gatgcagcagtgggaccaaaaggtagcaaaggatttccaggacttccaggagccaaaggg
gaacgtggattctctggtaggccgggcccacctggcttaccaggctctccaggaatcaca
actgttggacctcctggcccacctggcttacctggtgagagaggacagaagggagatcaa
ggtttacctggtgtttccattcctggacagccaggacttgatggaccccgaggatcccca
ggacctccaggccccccaggaccacctgcaccatcagtttctcctggtgaaggattatgt
gagcaggggcctccaggtcctcccggaattccaggacagccaggctttatgggggagcga
ggccaaaaaggtgatcaaggagacacatgtttcaattgcataggaactggaatatctggg
ccccctggagagagaggacctccaggacctccaggtagtccaggttctcctggttttcct
ggacagaaaggtgaaaaggggcttcttggattaactggccttgtaggaccacctggattt
ccagggcccccaggtgcccctgggagacctggtcctaaaggagacccaggggatgtcctg
acttctccaagaatgaaaggtgacaagggagatcctggcttcccaggacctccaggtctt
cctggcatagatggcactcctggacgagatggactgccaggtctgcctggccctaaggga
gaacctggcagtgttgcattcaaaggagaaatgggaattccaggtgacccaggaatacca
ggtcttcctggagacaaaggaattcctggacctcctggttttggtccacaaggttcacca
ggtgaaaaaggcatccaaggtgtatcaggtcgtccaggccctcctggagttcctggtcca
aaaggtgaacctggtcagactataacagaaccaggagtacctggcccccctggtcctcca
ggcagaaatggcgacccaggtcttccaggggatcctggtcagccaggtcagcgtggccta
ccaggcatcccaggtgtaaaaggagagccaggtattcctggcattgggcttccaggtcca
ccaggcccaaaaggttttccaggtactcctggcccccccggagctccaggaactccaggt
caccctggtctagatggacctcctggaccacctggttttccaggacagaagggagatcgt
ggatttggagttccaggaccacctggatccccaggaccaccaggcttaaaaggcgttcaa
gggcccaaaggtgatactggcttcccaggaaaccctggtctcccaggacgagcaggtttt
gatggaactccagggcccaaaggtgagcctggaccaagcggaccaccaggacttccaggc
ccaccaggcatccctggaattggtggccaaggtccacccggacctcctggacttccagga
cctgttggtccaccaggttccccagggttgcaaggcattccaggagagaagggggatcca
ggtcctccaggcttcgacattcctggtcctccaggtgaccaaggaactccaggatatcca
ggaccacctggtcttccagggccgcagggttctcctggaccacctggcagggatggaata
ccaggatttccgggtgctaaaggcgaaatgggtgtcatgggagcccctggtcctccaggg
cctccaggaactcctggaagaaatggcctacccggcttgaaaggtaataatggattacct
ggtcagccaggacctcctggaccagtaggacagaaaggcatcaaaggtgaaccaggtctg
ccaggtccacctgggaaagttgatccaaagcagctgggagcaaaaggagaaaagggcgaa
ccaggtgttccaggtattcctgggttatcaggacagaaaggttatcaaggtctcccaggt
gaccctggcccaccaggacttagtggcccaccaggtgcaccaggattaccaggcatcaag
ggagagacgggacttcctgggcagccaggaccaataggacctccagggttaaaaggtgcc
atgggagagatgggtcttccaggtcccccagggattaaaggcagccaaggagtaggagga
cgtccaggccagcctgggccagctggatttcctgggctgaagggggaaaaaggtgaccct
ggtctttcagacatcggtattcctggtccccctggatcaaagggtgatcttggtttgcct
ggatacccaggcagtccaggcagtaaaggtatagctggaaatcctggtttgcctgggttg
ccaggcaatccaggtgcaaaaggagagcccggacttcctggattcccaggaacgccagga
attccaggaccaaaaggtattgaggggcctccaggtaatcctggtttgcctggaccacct
ggaccagtaggtgatgttggtcgtcctggctctcctggtcttcctggggagaagggacag
cccggtcgagatggtatccctggaccagctggtcagaagggagaaccaggtctgccaggt
tttggacgcccggggcctccaggactcccaggattatcagggcaaaagggtgaactaggg
ctacctggcccaccaggaccccctggacttccgggtctgaagggagaaccaggtttccag
ggatttcctggtctacagggtccaccaggtccaccaggattaccagggccacctctggaa
ggtcctaaaggtagccctggcccacagggtgttccaggaagaccaggtccctcaggtcct
ccaggtccaccaggcccagaaggtcctcgagggccaccaggcagtggagcacttaaagga
gaaaaagggaacccaggtcaacctggtccacctggcctgagtggtcaaaagggagatcaa
ggatcacctggacgccagggggatcctggtcgtcctggtctgaatgggatgaagggtgat
ccgggtgttccaggtgtgccaggattcccaggtatgaagggtccccctggacctgcagga
cctgctggcctcacgggcagtcaaggcctgccaggcccaccaggtccaccaggcttacca
ggttctattggacgaagcattgttgtcaaaggtgaccctggtccaccaggtcctccagga
caacctggctcaaaagggccaccaggattgccagggccacaaggattaccaggtccaatt
ggtctccctggtgatccagggcgagatgggctacccgggtttgatggaccagcaggacgt
aaaggcgagagaggtcttccaggccaaccaggttcacgaggaacacaggggccacctggt
cctgatggtctgcaaggcccacctggtcctcctggaacagcttcagtcgctcatgggttc
cttataactcgtcacagtcagactagggatacgccactatgtccacaaggaacattaaga
atatatgatggattctctcttctgtatgttcaaggaaacgagagagcccatggccaagat
ttgggtactgcagggagttgtctgcgacgtttcagcaccatgcccttcatgttctgcaac
atcaacaatgtttgtaactacgcctcaaggaacgactactcctactggctctccactccg
gagccaatgccgatgagcatggagccgctgacggggcagagcattcagccgttcattagc
cgatgtgttgtttgtgaggctcctgcgatggtaatagctgtccacagtcagaccattcag
attccttcatgtccgccaggctgggactccctctggattggttattcgttcatgatgcac
actagtgctggagcagagggctctggacaggccttggcatcgcccggatcctgtttagaa
gaattccgctcagctccctttattgagtgccatggtcgtggcacttgtaattactatgcc
aattcctatagtttctggctggcaactatagaggtgtcagaaatgttcagtaaacctcag
tcagagactctgaaagctggagacttgaggacgcgtattagtcgttgtcaagtttgcatg
aagaagacgtaa
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integrated database retrieval system
