Nothoprocta perdicaria (Chilean tinamou): 112945128
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Entry
112945128 CDS
T07556
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04382
Cornified envelope formation
npd04510
Focal adhesion
npd04512
ECM-receptor interaction
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112945128 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112945128 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112945128 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112945128 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npd04147
]
112945128 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112945128 (COL4A1)
Exosome [BR:
npd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112945128 (COL4A1)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112945128 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112945128
NCBI-ProteinID:
XP_025892431
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MRLGLGFALLLLLGAQLGAVAAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGP
EGPPGPPGLKGDTGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPGIPGCNGT
KGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGEKGFPGQPGLPGPPG
APGFQGPLGPPGLPGEPGPPGPPGPPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPH
MKEKGSEIIRGEKGDPGEKGEQGVPGLPGSVFKGDKGEPGKPGPRGKPGKDGEPGPKGEP
GLPGGFGIPGRPGEPGLKGEKGDQGLPGPPGRVIDTGTVDSFGEKGDPGVSGLPGLKGQK
GEKGFPGIQGIPGPPGRPIPDRVGAPGVPGERGEKGEKGSPGFPLPGPPGRDGFPGPPGL
PGPPGPPGVTDGIDQCQPGEPGAPGRPGAPGQHGFPGEMGEKGDKGDSCATCEVGPPGLP
GPQGPPGPAGFPGQAGFKGERGLPGLDGLPGVPGPPGTPGLIGSPGAKGEPGDFSYDSIL
KGEKGDPGFPGQPGIPGRQGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGE
RGFPGPPGTGTAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGF
PGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGQPGTPGTPGLD
GLPGAPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGMPGLRGEQGFPGIPGQQG
FRGDPGLPGIQGLQGSPGAPGLGPQGPPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMP
GPKGDKGSQGQPGVPGSVGLPGLPGPQGTAGPKGSSGAKGEMGVMGTPGLPGSPGPVGER
GFPGEKGSPGFKGVIGPQGDPGVKGDKGEVGLPGKPGSMDGMDMVSLKGQKGDQGEKGDH
GATGEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLP
GTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSG
EKGEKGSAGLPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPG
LPGPAGSIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGDVGFPGSPGS
PGIPGLKGEPGFAGPPGPKGSQGLPGLPGSAMEGPKGDRGPQGQPGLPGLPGPTGPPGPP
GLKGAKGEQGSDGWPGTPGGPGGKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPK
GSPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLVKGDPGLPGPVGPVGLKGFPGLPGP
KGQQGVTGPSGIPGPPGSPGFDGKPGQKGDIGPYGPPGPRGLPGPPGPEGLPGAMGPPGA
ASVAHGFLVTRHSQTIEEPQCPSGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCAVCEAPAMVIA
VHSQTIQIPQCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATIERHEMFKKPTPSTLKAGDLRSNVSRCQVCMRRT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcgggctcggcttcgcgctgctgctgctgctgggcgcccagctcggcgccgtg
gccgccgcgggttgttctggttgtggaaaatgtgactgcagtggagtcaaagggcaaaaa
ggtgaaagaggcttgccaggactacagggtgtgattgggtttcctggaatgcaaggacct
gaaggtccccctgggccaccagggcttaagggtgatactggagaaccaggactgccagga
acaaaaggaacaagaggcccaccaggatcatcaggatatccaggaaacccaggccttcct
ggcattcctggacaagacggccctccaggtccacctggtattccaggatgtaatggcaca
aagggtgaaagaggtccagttggccccccaggtttaccaggattgactggaagcatagga
cccccaggacctcctggaatgaagggggatcctggtgaagttattggtcttttacctcct
agtctgctaaaaggtgaaaaaggcttccctggtcaacctggactacctggtccacctgga
gccccaggatttcaagggccattggggccaccagggcttccaggagagccaggtcctcca
gggccaccaggacctccaggtgagaagggctacatgggcttgggatttcaaggtcccaaa
ggtgaaaagggagaacaaggagtaaggggccctcctggacctccaggcccagctccacat
atgaaagaaaaaggaagtgaaatcataagaggagaaaagggtgatcctggtgaaaagggt
gaacagggtgtcccaggattgccaggctcagttttcaaaggggacaagggtgaacctggg
aagcctggaccacgtggtaagcctggaaaagatggtgaaccaggaccaaaaggagaaccc
ggcttgcctggcgggtttgggattcccggacgacccggtgaacctggtcttaagggtgaa
aaaggtgatcaaggtcttccagggcctccaggaagagttatagatactggaacagtggat
tcttttggtgaaaaaggagaccctggagtttcaggcttgccaggactgaaaggtcaaaaa
ggtgaaaaaggtttccctggaatacaaggaatcccaggtcctccaggtcgacctattcca
gaccgggtaggagcacctggtgtccctggagaaagaggtgaaaaaggtgaaaagggttct
ccaggattccctttacctggacctcctggaagagatggtttcccaggtcctcctgggttg
cctggcccgccaggtcctccaggcgtaacagatgggattgatcaatgccagccaggtgaa
cctggtgcaccaggtagacctggagctccaggacaacacggatttccaggagagatggga
gagaaaggtgacaaaggtgattcctgtgccacatgtgaagtaggacctcctggactgcca
ggaccacaagggccaccaggtccagcaggttttccgggacaagcaggcttcaaaggtgaa
agaggcttacccggacttgatggacttccaggcgtacctgggcccccaggcactccagga
cttataggcagccccggggcaaaaggagaaccaggagatttttcttatgactctatcctg
aaaggcgaaaagggagatcctggtttcccaggtcaaccaggtattcccggaagacaaggg
acaccaggaaaagatggcctaccaggtccacagggcccaaaaggagcatcgggtacagct
ggcttgaaaggagaacgtggmccccctggccaacctggattccctggagtccgtggtgaa
agaggttttcctggtcctcctgggacaggcacagcagggttacctggtgaaaaaggagac
agaggctttgctggaaccccaggtttacccggccttccaggggcaaaaggggaagcagga
cgaacggttcctctccctggtcctcctggggcagatggccttcctggaccacccggtttc
cctggacctcagggtgacaaaggaaatcctgggctgccaggaagacctggyctgccagga
gaaaaaggtgctgttgggcagccaggtataggtttccctggacctccaggacccaaaggt
ttccaaggtcagcctggctctcctggtcagccaggtactccaggaacccctggcctggat
ggtttgccaggtgccccaggtttacagggtcaaaaaggtgaacctggagtaggtctccca
ggccctaagggactaccaggcccaccaggtccagctggtatccctggagaaaagggaaat
ccaggaatgcctggcttacgtggcgagcaagggtttccggggattcctggtcagcaagga
ttccgaggtgaccctggcctccccggcatacaaggcttacagggctctccaggtgcacca
ggactaggaccacaaggaccaccagggcctgctgggcaaccaggaccccagggaccacca
ggatttcctggaataaaaggagaaaggggctttcctggtatcccaggtctagacatgcca
ggaccaaaaggggataaaggtagccagggccagcctggagtaccaggttctgtgggatta
cctggcctgcctggaccacaagggacagctggaccaaaaggatcatcgggagctaaagga
gaaatgggagttatgggaactcctggtttgccagggtctcctggaccagttggagaacga
gggttccctggtgaaaaaggtagtccaggtttcaaaggagtaattggaccacaaggtgat
cctggtgtcaaaggggacaaaggtgaagtaggtctcccgggaaaacctggaagcatggat
ggcatggacatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccat
ggagcaacaggagaaaaagggttacgtggggagtatggagaaccaggaattccagggaag
gatggtgaacctggtactccaggacatccaggaccaaaaggtgatcaaggacccccaggg
tacccaggagatccaggaattccaggacaaaaaggatcagttggtgaaatgggtttacca
ggaacacctggagaaaagggtctgccgggaattccaggttccccaggaacaccagggttc
cctggacagaaaggtgaaaaaggagacaaaggagcagcaggttttcctggaattggtttt
ccaggatctcctggtgagaagggtgaaccaggaagaacaggtagtccaggcttatctgga
gagaagggtgaaaaaggtagtgcaggacttccaggaatgccaggtgccccaggtcccaaa
ggatcccctggcatggcaggatttccaggaagcccaggtcgccatggagaaaagggtgaa
aagggacttcctggcttaagtggcattccaggcttaaaaggagaaccaggtgaaccaggt
cttccgggtcctgctggctctattgggcagaaaggtgaaccgggttatgatgggattcct
ggtgcagctggtgcaaagggtgaacaaggtcttcctggtagaggacttccaggatttcca
ggtgcaaagggagataaaggtgcaaaaggtgacgtgggttttccaggatccccaggaagt
ccagggatccctggtctgaaaggagaaccaggatttgcaggtccaccaggccctaaaggc
agccaaggtcttcctggattaccaggaagtgcaatggagggacctaaaggagacagagga
ccccaaggccaacctggacttccaggtttaccaggtccaacaggaccaccaggacctccg
ggactgaaaggggccaaaggagagcaggggagcgatggctggcctgggactcctggaggt
ccaggaggcaaaggtgacccaggattccagggcttgcctggtagcccaggtttaccagga
gatattggtcaaaagggtgatttgggacctccaggagtcccaggtgttccaggtccaaaa
ggatctcctgggttcccaggtcttaagggagagcgaggtgaccaaggtcttcctggatcc
aaaggtttacaaggcccaccaggcccaccaggtccttttcagcttgttaaaggggatcct
ggtttgcctggccctgtaggaccagttggtctcaaaggattcccaggacttccaggtccc
aagggacagcaaggggttacaggaccttctggtatacctgggccccctggtagcccagga
tttgatggtaaacctgggcagaaaggagatattggtccttatggtcctccagggcccaga
ggactccctggtccaccaggtcctgaaggtttgcctggggctatgggtcctccaggagcc
gcatctgttgctcatggcttccttgttaccaggcacagtcagacaattgaagaacctcaa
tgtccatctggaactaggctcatttaccatggttactccctgctttatgtacaaggcaat
gaaagagcacacggccaggatttgggcacagcagggagctgtcttcgtaaatttagtact
atgccattcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactat
tcttactggctgtccactcctgaacccatgccaatgagtatggctcctatcacaggtgat
aatatcagaccattcatcagcagatgtgcggtgtgtgaggctcctgctatggtgatagct
gttcacagtcaaacaattcaaataccccaatgtcctgaaggctggagttcactttggatt
ggttactcttttgtcatgcacaccagtgctggtgctgagggctctggccaggccctggcc
tctccgggttcctgcctagaggagttccgcagcgctcccttcattgaatgccacggccgg
ggcacctgcaattactatgcaaatgcttacagcttctggcttgccactatagagaggcat
gagatgttcaagaaacctacgccctcaacgttgaaagcaggtgatctgcggtcaaatgtt
agccgatgtcaagtctgtatgagaagaacataa
DBGET
integrated database retrieval system
