Nothoprocta perdicaria (Chilean tinamou): 112945128
Help
Entry
112945128 CDS
T07556
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04510
Focal adhesion
npd04512
ECM-receptor interaction
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112945128 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112945128 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112945128 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npd04147
]
112945128 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112945128 (COL4A1)
Exosome [BR:
npd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112945128 (COL4A1)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112945128 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112945128
NCBI-ProteinID:
XP_025892431
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MRLGLGFALLLLLGAQLGAVAAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGP
EGPPGPPGLKGDTGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGPPGIPGCNGT
KGERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGEKGFPGQPGLPGPPG
APGFQGPLGPPGLPGEPGPPGPPGPPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPH
MKEKGSEIIRGEKGDPGEKGEQGVPGLPGSVFKGDKGEPGKPGPRGKPGKDGEPGPKGEP
GLPGGFGIPGRPGEPGLKGEKGDQGLPGPPGRVIDTGTVDSFGEKGDPGVSGLPGLKGQK
GEKGFPGIQGIPGPPGRPIPDRVGAPGVPGERGEKGEKGSPGFPLPGPPGRDGFPGPPGL
PGPPGPPGVTDGIDQCQPGEPGAPGRPGAPGQHGFPGEMGEKGDKGDSCATCEVGPPGLP
GPQGPPGPAGFPGQAGFKGERGLPGLDGLPGVPGPPGTPGLIGSPGAKGEPGDFSYDSIL
KGEKGDPGFPGQPGIPGRQGTPGKDGLPGPQGPKGASGTAGLKGERGPPGQPGFPGVRGE
RGFPGPPGTGTAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGF
PGPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGQPGTPGTPGLD
GLPGAPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGNPGMPGLRGEQGFPGIPGQQG
FRGDPGLPGIQGLQGSPGAPGLGPQGPPGPAGQPGPQGPPGFPGIKGERGFPGIPGLDMP
GPKGDKGSQGQPGVPGSVGLPGLPGPQGTAGPKGSSGAKGEMGVMGTPGLPGSPGPVGER
GFPGEKGSPGFKGVIGPQGDPGVKGDKGEVGLPGKPGSMDGMDMVSLKGQKGDQGEKGDH
GATGEKGLRGEYGEPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGIPGQKGSVGEMGLP
GTPGEKGLPGIPGSPGTPGFPGQKGEKGDKGAAGFPGIGFPGSPGEKGEPGRTGSPGLSG
EKGEKGSAGLPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPG
LPGPAGSIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGDVGFPGSPGS
PGIPGLKGEPGFAGPPGPKGSQGLPGLPGSAMEGPKGDRGPQGQPGLPGLPGPTGPPGPP
GLKGAKGEQGSDGWPGTPGGPGGKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPK
GSPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLVKGDPGLPGPVGPVGLKGFPGLPGP
KGQQGVTGPSGIPGPPGSPGFDGKPGQKGDIGPYGPPGPRGLPGPPGPEGLPGAMGPPGA
ASVAHGFLVTRHSQTIEEPQCPSGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFST
MPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCAVCEAPAMVIA
VHSQTIQIPQCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGR
GTCNYYANAYSFWLATIERHEMFKKPTPSTLKAGDLRSNVSRCQVCMRRT
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcgggctcggcttcgcgctgctgctgctgctgggcgcccagctcggcgccgtg
gccgccgcgggttgttctggttgtggaaaatgtgactgcagtggagtcaaagggcaaaaa
ggtgaaagaggcttgccaggactacagggtgtgattgggtttcctggaatgcaaggacct
gaaggtccccctgggccaccagggcttaagggtgatactggagaaccaggactgccagga
acaaaaggaacaagaggcccaccaggatcatcaggatatccaggaaacccaggccttcct
ggcattcctggacaagacggccctccaggtccacctggtattccaggatgtaatggcaca
aagggtgaaagaggtccagttggccccccaggtttaccaggattgactggaagcatagga
cccccaggacctcctggaatgaagggggatcctggtgaagttattggtcttttacctcct
agtctgctaaaaggtgaaaaaggcttccctggtcaacctggactacctggtccacctgga
gccccaggatttcaagggccattggggccaccagggcttccaggagagccaggtcctcca
gggccaccaggacctccaggtgagaagggctacatgggcttgggatttcaaggtcccaaa
ggtgaaaagggagaacaaggagtaaggggccctcctggacctccaggcccagctccacat
atgaaagaaaaaggaagtgaaatcataagaggagaaaagggtgatcctggtgaaaagggt
gaacagggtgtcccaggattgccaggctcagttttcaaaggggacaagggtgaacctggg
aagcctggaccacgtggtaagcctggaaaagatggtgaaccaggaccaaaaggagaaccc
ggcttgcctggcgggtttgggattcccggacgacccggtgaacctggtcttaagggtgaa
aaaggtgatcaaggtcttccagggcctccaggaagagttatagatactggaacagtggat
tcttttggtgaaaaaggagaccctggagtttcaggcttgccaggactgaaaggtcaaaaa
ggtgaaaaaggtttccctggaatacaaggaatcccaggtcctccaggtcgacctattcca
gaccgggtaggagcacctggtgtccctggagaaagaggtgaaaaaggtgaaaagggttct
ccaggattccctttacctggacctcctggaagagatggtttcccaggtcctcctgggttg
cctggcccgccaggtcctccaggcgtaacagatgggattgatcaatgccagccaggtgaa
cctggtgcaccaggtagacctggagctccaggacaacacggatttccaggagagatggga
gagaaaggtgacaaaggtgattcctgtgccacatgtgaagtaggacctcctggactgcca
ggaccacaagggccaccaggtccagcaggttttccgggacaagcaggcttcaaaggtgaa
agaggcttacccggacttgatggacttccaggcgtacctgggcccccaggcactccagga
cttataggcagccccggggcaaaaggagaaccaggagatttttcttatgactctatcctg
aaaggcgaaaagggagatcctggtttcccaggtcaaccaggtattcccggaagacaaggg
acaccaggaaaagatggcctaccaggtccacagggcccaaaaggagcatcgggtacagct
ggcttgaaaggagaacgtggmccccctggccaacctggattccctggagtccgtggtgaa
agaggttttcctggtcctcctgggacaggcacagcagggttacctggtgaaaaaggagac
agaggctttgctggaaccccaggtttacccggccttccaggggcaaaaggggaagcagga
cgaacggttcctctccctggtcctcctggggcagatggccttcctggaccacccggtttc
cctggacctcagggtgacaaaggaaatcctgggctgccaggaagacctggyctgccagga
gaaaaaggtgctgttgggcagccaggtataggtttccctggacctccaggacccaaaggt
ttccaaggtcagcctggctctcctggtcagccaggtactccaggaacccctggcctggat
ggtttgccaggtgccccaggtttacagggtcaaaaaggtgaacctggagtaggtctccca
ggccctaagggactaccaggcccaccaggtccagctggtatccctggagaaaagggaaat
ccaggaatgcctggcttacgtggcgagcaagggtttccggggattcctggtcagcaagga
ttccgaggtgaccctggcctccccggcatacaaggcttacagggctctccaggtgcacca
ggactaggaccacaaggaccaccagggcctgctgggcaaccaggaccccagggaccacca
ggatttcctggaataaaaggagaaaggggctttcctggtatcccaggtctagacatgcca
ggaccaaaaggggataaaggtagccagggccagcctggagtaccaggttctgtgggatta
cctggcctgcctggaccacaagggacagctggaccaaaaggatcatcgggagctaaagga
gaaatgggagttatgggaactcctggtttgccagggtctcctggaccagttggagaacga
gggttccctggtgaaaaaggtagtccaggtttcaaaggagtaattggaccacaaggtgat
cctggtgtcaaaggggacaaaggtgaagtaggtctcccgggaaaacctggaagcatggat
ggcatggacatggttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccat
ggagcaacaggagaaaaagggttacgtggggagtatggagaaccaggaattccagggaag
gatggtgaacctggtactccaggacatccaggaccaaaaggtgatcaaggacccccaggg
tacccaggagatccaggaattccaggacaaaaaggatcagttggtgaaatgggtttacca
ggaacacctggagaaaagggtctgccgggaattccaggttccccaggaacaccagggttc
cctggacagaaaggtgaaaaaggagacaaaggagcagcaggttttcctggaattggtttt
ccaggatctcctggtgagaagggtgaaccaggaagaacaggtagtccaggcttatctgga
gagaagggtgaaaaaggtagtgcaggacttccaggaatgccaggtgccccaggtcccaaa
ggatcccctggcatggcaggatttccaggaagcccaggtcgccatggagaaaagggtgaa
aagggacttcctggcttaagtggcattccaggcttaaaaggagaaccaggtgaaccaggt
cttccgggtcctgctggctctattgggcagaaaggtgaaccgggttatgatgggattcct
ggtgcagctggtgcaaagggtgaacaaggtcttcctggtagaggacttccaggatttcca
ggtgcaaagggagataaaggtgcaaaaggtgacgtgggttttccaggatccccaggaagt
ccagggatccctggtctgaaaggagaaccaggatttgcaggtccaccaggccctaaaggc
agccaaggtcttcctggattaccaggaagtgcaatggagggacctaaaggagacagagga
ccccaaggccaacctggacttccaggtttaccaggtccaacaggaccaccaggacctccg
ggactgaaaggggccaaaggagagcaggggagcgatggctggcctgggactcctggaggt
ccaggaggcaaaggtgacccaggattccagggcttgcctggtagcccaggtttaccagga
gatattggtcaaaagggtgatttgggacctccaggagtcccaggtgttccaggtccaaaa
ggatctcctgggttcccaggtcttaagggagagcgaggtgaccaaggtcttcctggatcc
aaaggtttacaaggcccaccaggcccaccaggtccttttcagcttgttaaaggggatcct
ggtttgcctggccctgtaggaccagttggtctcaaaggattcccaggacttccaggtccc
aagggacagcaaggggttacaggaccttctggtatacctgggccccctggtagcccagga
tttgatggtaaacctgggcagaaaggagatattggtccttatggtcctccagggcccaga
ggactccctggtccaccaggtcctgaaggtttgcctggggctatgggtcctccaggagcc
gcatctgttgctcatggcttccttgttaccaggcacagtcagacaattgaagaacctcaa
tgtccatctggaactaggctcatttaccatggttactccctgctttatgtacaaggcaat
gaaagagcacacggccaggatttgggcacagcagggagctgtcttcgtaaatttagtact
atgccattcttattctgcaatatcaacaacgtatgtaactttgcatcaaggaatgactat
tcttactggctgtccactcctgaacccatgccaatgagtatggctcctatcacaggtgat
aatatcagaccattcatcagcagatgtgcggtgtgtgaggctcctgctatggtgatagct
gttcacagtcaaacaattcaaataccccaatgtcctgaaggctggagttcactttggatt
ggttactcttttgtcatgcacaccagtgctggtgctgagggctctggccaggccctggcc
tctccgggttcctgcctagaggagttccgcagcgctcccttcattgaatgccacggccgg
ggcacctgcaattactatgcaaatgcttacagcttctggcttgccactatagagaggcat
gagatgttcaagaaacctacgccctcaacgttgaaagcaggtgatctgcggtcaaatgtt
agccgatgtcaagtctgtatgagaagaacataa
DBGET
integrated database retrieval system
