Nothoprocta perdicaria (Chilean tinamou): 112945734
Help
Entry
112945734 CDS
T07556
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112945734 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npd03019
]
112945734 (MTREX)
03041 Spliceosome [BR:
npd03041
]
112945734 (MTREX)
03009 Ribosome biogenesis [BR:
npd03009
]
112945734 (MTREX)
03016 Transfer RNA biogenesis [BR:
npd03016
]
112945734 (MTREX)
Enzymes [BR:
npd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112945734 (MTREX)
Messenger RNA biogenesis [BR:
npd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
112945734 (MTREX)
Spliceosome [BR:
npd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
112945734 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
112945734 (MTREX)
Ribosome biogenesis [BR:
npd03009
]
Eukaryotic type
Pre-60S particles
Helicases
112945734 (MTREX)
Transfer RNA biogenesis [BR:
npd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
112945734 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112945734
NCBI-ProteinID:
XP_025893193
Ensembl:
ENSNPEG00000000674
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAAAKKSKAAPDAAAKPGKRPEQKSPVAAPGKSKREAEASSI
EDAALGKKPKLEEAVSEDVSLSDLMPHVKVQAVETVEGCTHEVALPAGEDFTGLKPRTGK
AAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCL
SDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINM
PARTVLFTSACKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVSKLEEQ
YNKIAIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGW
GVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPV
LVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLK
KVIQKVEAFEHRMYSHPLHNDPSLETVYKLCERKAQIAVDIKAAKRELKKARTVLQMDEL
KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC
FVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVY
TWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcgttcggggacgagctgttcagcgtgttcgaggaggacgcggccgccgcc
gccgccaagaagagcaaagcggctcccgatgccgccgcgaagccggggaaacgaccggag
cagaaatccccggtagcggctccagggaagtccaagcgggaggccgaggccagcagtatc
gaagatgccgctttggggaagaagcctaagttggaagaagccgtatcagaagatgttagt
ctgtcagacttgatgcctcatgtgaaggtgcaagctgtggaaactgttgaaggttgtaca
catgaggttgcacttcctgcaggagaagacttcacaggtctgaagccgagaactggaaaa
gctgctaaagaatatccattcattcttgatgcgtttcagagagaagctatcctttgtgtg
gacaacaaccaatctgtgttagtgtcagctcatacatcagctggtaaaactgtatgtgca
gagtatgcaattgccttggccttgagggagaaacagcgggtgatatttaccagtccaatt
aaagctttgagtaatcagaagtatcgtgagatgtatgaggaatttcaagatgttggtttg
atgactggagatgtcaccattaatcctacagcttcatgtctagtaatgacaacagagatt
ttgaggagtatgctctacagaggttctgaggttatgcgagaagttgcatgggttattttt
gatgaaattcattacatgagagattcagaacgtggtgtggtttgggaagagacaattatt
ttgctccctgacaacgttcactacgtgttcctttctgccactattcccaatgcccgtcag
tttgctgagtggatctgccatcttcacaaacaaccttgccatgtgatttacacagactat
cgacccactccactgcagcactatatattcccagcaggaggagatggactccacctcgtg
gttgatgaaaatggagatttcagagaagataattttaacacagcaatgcaggtgcttaga
gatgcaggggacttggccaagggggaccagaaaggcaggaaaggaggaacaaaaggtcct
tcaaatgtgtttaagattgtgaagatgatcatggaaaggaatttccaacctgtaattatt
ttcagcttcagtaaaaaagattgcgaagcctatgcacttcagatgacaaagttagatttc
aatacagatgaagaaaagaagatggttgaggaagtattcaataatgcaattgattgtcta
tcagatgaagacaaaaagcttcctcaggtagagcacgtacttcctcttctgaaacgagga
attggcatccatcatggtgggctgcttcctatcttaaaagaaaccatagaaattcttttc
tctgaaggcttaataaaggctttatttgcgacggagacatttgctatgggaattaacatg
ccagccaggactgtgctgttcacaagtgcctgtaaatttgatgggaaagatttccgatgg
atatcctcaggtgaatatattcaaatgtcaggtcgtgcaggacgccgaggaatggatgac
agaggaatagtcattcttatggtggatgaaaaaatgagcccaacaattggcaagcagctt
ttgaagggttcagctgatcccttgaatagtgcatttcacctgacatacaacatggtactg
aacttgcttcgagtagaggaaattaacccggaatacatgttagaaaaatccttttatcag
ttccagcattacagagctattccaggagttgtagaaaaggtgagtaaattggaagaacag
tacaacaaaatcgcaatcccaaatgaagaaaatgtggtcatatactacaaaattcggcag
cagcttgcaaaactgggtaaagagattgaagaatatattcacaaaccaaaatactgctta
ccttttctacagccaggaagactggtaaaggtgaaaaatgaagacgatgactttggatgg
ggagtggttgttaatttctctaagaaatcaaatgttaagcctaattctggtgaattggac
ccgctgtatgtagttgaggtgcttctgcactgcagcaaagagagtttgaaaaattctgct
actgaggctgccaagccagctagacctgatgagaaaggagagatgcaggttgttcctgtc
ctggtgcatctgctctcagccatcagcagcgtccgcctctacatccctaaagacttgagg
cccatcgacaacaggcagagygtgctcaaatctatccaagaggtgcagaagcggtttcct
gatggggtcccgttactggaccctatcgacgacatgggcatcaaagatcaaggactgaag
aaagttatccaaaaagtggaggcctttgagcacaggatgtactcrcatcctctccacaac
gatcccagtttggaaactgtgtacaaactctgtgaaagaaaagcacagatcgctgtggac
atcaaggcggccaagcgggagctgaagaaggcccgcaccgtgctgcagatggacgagctc
aagtgccgcaagcgcgtcctgcgccgcctgggcttcgccacctcctccgacgtcatcgag
atgaaggggcgcgtggcctgcgaaatcagcagtgctgatgaactgctgctgacagaaatg
atgtttaatggtctcttcaatgacttatctgcagaacaggccactgccctactcagctgc
tttgtgtttcaagagaactccagtgagatgcccaaattgacggagcagttggcaggacca
ctccgtcaaatgcaggaatgtgctaaaagaatygccaaggtctcagctgaagcaaaactg
gaaattgatgaagaaaattacttaaattctttcagacccaacttaatggatgtcgtatat
acatgggcgaatggagcaaactttgctcacatttgcaaaatgactgatgtctttgaaggg
agcatcatccggtgcatgaggcggctggaggagctgctgcgacagatgtgccaggctgca
aaagccatcggaaacacggagctggaaaacaagtttgccgagggtattacaaagatcaag
agagacattgtgtttgctgcaagcctctacctgtaa
DBGET
integrated database retrieval system
