Nothoprocta perdicaria (Chilean tinamou): 112947868
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Entry
112947868 CDS
T07556
Name
(RefSeq) collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04382
Cornified envelope formation
npd04510
Focal adhesion
npd04512
ECM-receptor interaction
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112947868
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112947868
09142 Cell motility
04820 Cytoskeleton in muscle cells
112947868
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112947868
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npd04147
]
112947868
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112947868
Exosome [BR:
npd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112947868
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112947868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112947868
NCBI-ProteinID:
XP_025895812
LinkDB
All DBs
Position
Unknown
AA seq
1671 aa
AA seq
DB search
MAGGRCPGRLAPLLLLALLAPGRRAAAENCVCKGKSPCLCDSMKGNKGEKGFPGIPGPVG
VRGFPGPEGPPGPQGPKGSPGLMGLPGSKGIRGIPGIPGFSGPPGLPGEPGTVGPPGRPG
VPGCNGTKGDRGFPGPPGRRGTAGVPGIPGVKGEKGCPADGHNQGYGAKGDPGLPGVRGV
QGSQGIQGYPGDVGPEGPPGVSGMPGRAGPPGPKGLMGMKVIGNKGRKGDTGLTGPPGPP
GTVIVTLSGPDNMTDLKGEKGEKGSRGPPGPVGFTGPVGDSQSEKGDRGEPGAQGKPGKE
GAPGPPGLRGRKGEQGKPGLAGKQGAKGMKGDTGPPGACGRTEYYDKVVGEKGDKGPPGP
PGPKGQRGVPGPRGPPGDAGRPGVSRLGLRGPPGFPGPKGIKGEKGQPGLHIMGPPGLPG
ITGRPGSVGLPGLPGEPGRITFRAGLPGLPGEPGCVGPPGRPGDTGMKGDDACLCTDCSY
IPGTPGLPGPPGPRGQDGIPGREGTPGSKGSPGSPGAPGYPGPRGLPGFKGDQGHKGSKG
DPGYVYPEGPKGEQGDPGAEGDKGRKGSSGFLGRPGSKGAKGSKGEQGLAGSKGDRGLPG
LPGNLGLAGEMGLPGPPGYGPQGTRGLKGSKGVPGPPGLPGEIGVKGETSTITSLPGLPG
PQGPSGFPGPPGVPGRAGSRGQPGDSGHPGPTGDTGFPGLGFPGNPGPKGDKGLAGGRGS
PGCEGKIGDPGRPGNLGLPGGKGDPGVVIPGEPGRAGSPGGSGVPGPKGDTGFPGLPGLP
GHAGHDGDDGLRGDPGLPGIPGDPGPPGKPAECLIGLPGLPGGEGATGPPGGRGSLGSKG
KIGPPGLGIPGIFGNPGEPGRIGPQGNAGLPGPKGQSGRPGISGVPGPRGEPGVMGALGV
PGPPGAFGNPGNPGSRGSFGFPGLKGRKGLLGQKGEPGDKGFPGPSETLVGTGTKGERGS
DGFQGRMGFEGEKGDAGVQGPPGLAGSEGIPGLPGVKGFMGLPGIPGGQGFPGAPGDKGD
MGIPGPKGQKGSPGFPGPSGDSGQIGSEGSPGDKGDPGYPVPGPPGDHGPKGDPGPPGRL
GSKGEKGSQGQPGRAGVPGRDGIRGESGAAGVPGKVGLPGNAGAKGLQGHPGQMGTRGPP
GAVGEPGKNGLVGERGNQGLDGMPGTPGDRGEPGAPGRGIPGLQGIPGRKGIKGDMGLPG
FPGPPGTKGCRGDQGPIGPPGMMGFPGFQGATGMAIPGQKGNRGIAGADARPGAPGFPGP
PGLPTLSMKGSKGFRGADGIPGPTGPKGNIGLPGPKGMEGRSGFPGARGDPGFIGFPGVK
GEKGNQGPPGPQGAEGPRGPKGQHGPPGVPGKVFSVPGNKGAPGLPGRPGTPGDQGIQGI
SGLQGPKGLKGLPGSYGSPGQPGLPGPKGDRGFPGQRGPPGLIGFPGLQGLPGSPGVIVP
GPARRGFIFTRHSQSIKIPACPYGTSQIYVGYSLLFVQGNERAHGQDLGTAGSCLQRFTT
MPFLFCNTNNVCSFASRNDYSYWLSAAATMPVDMAPISGRALEPYISRCVVCEGAAMVIA
VHSQTTVVPACPEGWTSLWKGFSFVMYTSAGSEASGQALASPGSCLEEFRAIPFIECHGR
GTCNYYTNSYSFWLASLNPRRMFRKPLPQTLKAGELENIISRCQVCMKIPV
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggccgctgccccggccgcctggcgccgctgctgctcctcgccctgctggcg
ccgggccgccgcgctgcggcggagaactgtgtgtgcaaaggtaaaagtccctgcctttgt
gacagcatgaaaggtaataagggtgaaaaaggcttccctggcattcctggtccagttggt
gttagaggttttcctggcccagaagggcctccagggccacagggacctaagggttctcca
ggacttatgggcttacctggatctaaaggtatacgaggaatcccgggaatacctggattt
tcaggccccccaggtcttccaggcgagccgggaactgttggtcctcctgggcgcccgggt
gttccaggctgcaatggcacgaagggcgatcgaggttttccaggtcctccaggtagaaga
ggtactgcaggtgttccaggtatccctggcgtgaaaggggaaaaggggtgtcctgcagat
ggccataaccaaggatatggtgcaaaaggtgaccctggattgccaggagtgcgtggagtt
cagggttctcagggtattcaaggatatcctggggatgttggaccagagggccctccagga
gtttcaggaatgccagggagagcaggacctccaggacctaagggtctcatgggaatgaaa
gtaataggaaacaaaggaagaaagggtgacactggattaactggaccccctggaccacca
ggaactgtcattgtgacattaagtggaccagacaacatgacggacttgaaaggagagaaa
ggagaaaaaggatcgagaggacccccagggccagtgggatttacgggtccagttggtgat
tctcagagtgaaaagggtgaccgtggagaacctggagcgcagggtaaacctggaaaagaa
ggtgccccgggtccacctggtttgcggggacgaaagggtgaacagggcaaaccagggttg
gctggcaagcaaggagctaagggaatgaaaggagacactggtccacctggagcttgtggt
cgaacagagtattatgataaagtggttggtgaaaaaggagataaagggcctcccggacct
ccaggcccaaaaggtcaacgtggtgtgcctgggccaaggggtcctcctggagatgctggt
agaccaggtgtgtcaagacttggtctgagaggtcccccaggatttcctgggccaaaagga
ataaaaggagagaaaggacaacctggtttgcacatcatgggccccccaggactacctggg
attactggcagacctggttctgttgggttaccaggtctccctggagaaccaggtagaata
acatttagagctggcctacccggacttcctggagagccagggtgtgtgggacctccagga
cgtccaggagatactggcatgaaaggtgatgatgcttgcctgtgtactgattgcagctat
attcctggaacacctggtcttcctggtcctcctgggccacgtggccaagatggcatccct
ggtagagaaggaacaccaggttccaaaggatctccaggttctccgggagcaccagggtat
ccagggcctcgaggacttccaggttttaaaggagatcaaggacataaaggatcaaaaggt
gatccaggatatgtgtatccagaagggccaaaaggtgagcaaggagatccaggggctgag
ggagacaaaggaagaaaaggttcaagtggatttctaggaagacctggctctaaaggtgca
aagggttctaaaggcgagcagggattagctggctcaaaaggagacagaggactaccagga
ttgcctggtaatcttggtcttgctggagagatgggacttcctggaccaccaggatatgga
cctcaaggaacaagaggtctcaaaggctctaaaggggtacctggtccacctggattacct
ggagaaattggtgtgaaaggagagaccagtacaataacttcattaccaggattaccagga
ccacagggaccctctggtttccctggacccccaggagtgcctggcagagctggatctaga
ggtcagccaggtgattcaggtcacccagggccaacaggtgacacaggctttccaggactt
ggatttcctggaaaccctggtccaaaaggagataaaggacttgcaggaggaagaggatca
ccaggttgtgaaggaaagattggagatccaggccggcctggaaatctaggactgccggga
ggaaagggtgacccaggtgtagttattcctggagagccaggtagagcaggttcaccagga
ggtagtggcgttcctggcccaaagggtgatactggatttccagggcttccaggcctacca
ggacatgctggacatgatggtgatgatggcctaagaggagatccaggcttgcctggaatt
cctggggatccaggtcctccaggaaaacctgccgagtgtcttattggccttccaggtttg
ccaggtggtgaaggagccacaggccctccaggaggaagaggttcactaggctcaaaagga
aaaataggccctcctggcctgggtatcccaggaatttttggaaaccctggggaacctgga
cgaataggccctcagggaaatgcaggattacctggtcccaagggacaatctggaaggcca
ggaatctctggagtgcctggcccaaggggagagccaggtgtgatgggtgcattaggggtt
cctggacccccaggtgcgtttggaaacccaggcaatcctggtagcagaggttcttttggc
ttcccaggactaaagggaagaaaaggattactgggacaaaagggtgaaccaggtgacaaa
ggttttcctggaccatctgagactttggttggtactgggactaaaggagaacgaggctca
gatggatttcaaggaagaatgggttttgaaggagaaaaaggagatgcaggtgtgcaggga
cctccaggtcttgctgggtcagaaggaatacctggcttaccaggtgtcaaaggatttatg
ggtcttccagggattcctggaggacaaggattcccaggagcacctggagacaaaggggac
atgggaattccaggtcccaaagggcagaaaggatctccaggctttccaggaccatcaggt
gactctgggcaaataggctctgaaggctctccaggtgacaaaggagaccctgggtatcca
gttcccgggcctccaggagaccatggtccaaagggagatccaggtcccccagggcgttta
gggagcaaaggagaaaaaggatcccaaggtcagccgggccgtgcaggagtgccaggacga
gatgggatcagaggggaatctggagctgcaggggtcccagggaaagtaggacttcctggc
aatgctggtgctaaaggacttcagggccacccaggacaaatgggcactagaggccctcca
ggtgctgttggagaacctggaaagaatgggcttgttggtgaaagaggaaatcaaggtctg
gatggtatgcctggcaccccaggagataggggagaaccaggagcaccaggcagaggaatc
cctggcctgcaaggtattcctggtcgtaaaggaatcaaaggagacatggggctgcctggt
tttcctgggccaccaggtaccaaaggttgtcgtggggatcaagggcccattggaccccct
ggcatgatgggattccctgggttccaaggtgcaacaggcatggcaattcctggccaaaaa
gggaacagaggtattgctggtgcagatgcaagaccaggtgctcccggttttccagggcct
cctggtcttcccacgctcagcatgaaaggaagcaaaggttttagaggggcagatggcata
ccagggcctacgggcccaaaaggcaacattggtcttccaggtccaaaaggaatggaaggt
cgatcaggttttcctggtgctagaggagatcctggatttattggattcccaggtgtaaaa
ggagaaaagggtaatcaaggacctcctggaccacagggtgcagaagggccaaggggacca
aagggacaacatgggccacctggagtccctgggaaagtattctctgtcccaggaaacaag
ggggctcctggactgcctggaagaccaggaacaccaggtgatcaaggaattcaggggatt
tctggcctacaaggacctaaaggactaaaaggcctaccaggaagttatgggagtccaggt
cagccaggattgcctggtccgaaaggagacaggggctttccaggacaaagaggaccacct
ggactgattggctttccaggtctccaggggttacctggttctccaggtgttattgtccct
ggtccagcaagaagaggttttatctttactcggcatagccagtccatcaagatccctgcg
tgcccctatgggacatcacagatctatgttggctattcactgctctttgtacaaggaaac
gaacgagcacatggacaagaccttggaacagctggtagctgcttgcagcgatttaccacc
atgccattcttgttctgtaacaccaataatgtttgcagttttgcttctcgcaatgattac
tcatactggctgtcagctgcagcaacgatgccagtagacatggcaccgatttctggcaga
gctctagaaccctatataagcaggtgtgttgtctgtgaaggagctgcaatggtaatagca
gttcacagccaaacaactgtagttcctgcatgcccagaaggttggacttctctctggaag
ggattttcttttgttatgtacacaagtgctggctcagaagcttctggacaagcattggca
tcacctgggtcttgcttggaagaatttcgagccatcccattcattgagtgccatggcagg
gggacatgcaactactacacaaattcctacagcttctggttggcttcactaaatccaaga
agaatgttcaggaaacctttgccacagactttgaaagcaggagaattagaaaacatcata
agccgctgtcaggtctgcatgaaaataccagtctaa
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integrated database retrieval system
