Nothoprocta perdicaria (Chilean tinamou): 112948995
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Entry
112948995 CDS
T07556
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04510
Focal adhesion
npd04512
ECM-receptor interaction
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112948995 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112948995 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112948995 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112948995 (COL1A1)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112948995 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
112948995
NCBI-ProteinID:
XP_025897149
LinkDB
All DBs
Position
Unknown
AA seq
1453 aa
AA seq
DB search
MFSFVDSRLLLLIAATVLLTRGQGEEDIQTGSCVQDGLMYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPESHASPSYPDTAGVEGPKGDTGPRGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKAGGMPVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGARG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGAVGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGAAG
KDGEAGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGETGDAGAKGDAGPPGPAGPTGAPG
PAGAVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGSPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGAPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPPGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGQPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQATIAQKNWYVSKNPKEKKHVWFGETMS
DGFQFEYGGEGSNPADVAIQLTFLRLMSTEASQNVTYHCKNSVAYMDRDSGNLKKALLLQ
GSNEIEIRAEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAPMDVGAPD
QEFGIDIGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggttactgctgttgatagcagcgactgtgctactcacc
cgcgggcaaggagaagaagacatccaaaccgggagctgcgtacaggatggactaatgtac
aatgacaaggacgtgtggaaacccgagccctgccagatctgcgtgtgcgacagcggcaac
atcctgtgcgacgaggtgatctgcgaggacacctccgactgccccaacgccgagatcccc
ttcggagaatgctgccccatctgccccgaaagccacgcctccccttcctacccggacacc
gcgggagtagagggtcctaagggagacaccggccccagaggagacaggggactccccggc
ccccctggcagagatggcatccccggacagcccggcctcccgggaccccccggccctcct
ggcccccccggcctcggcgggaacttcgctcctcaaatgtcctacggatacgacgagaaa
gccggcggcatgccygtgcccggacccatgggtccagctggtccccgcggtctccccggc
cctcctggcgctcccggccctcaaggtttccaaggtccccctggtgagcctggagagcct
ggtgcttctggtcccatgggtccccgtggtccagctggcccccctggcaagaatggagat
gatggtgaagctggaaagcccggccgtcccggtgagcgcggacctcctggaccccagggt
gcacgtggtctccccggaactgctggcctgccaggcatgaagggtcacagaggtttcagt
ggtctggatggtgccaagggcgaacctggtccagctggccccaagggtgagcctggtagc
cctggtgagaacggcgctcccggacaaatgggtcctcgtggtcttcccggtgagagaggc
cgccctggtccctctggccctgctggtgctcgcggtaacgacggtgccaccggcgctgct
ggtcccccgggtccaactggcccagctggtccccctggcttccccggtgctgctggtgcg
aagggtgaaactggtccccagggcgctcggggtagcgaaggccctcaaggtgcacgtggt
gagcctggtcctcctggccctgctggtgctgctggtcctgctggcaaccctggtgctgat
ggtcaacctggtgccaaaggcgcaactggtgctcctggcattgctggtgctcctggcttc
cccggtgctcgtggtccctctggacctcagggtcccagcggtgcccctggtcccaagggt
aacagcggtgaaccyggtgctccaggcaacaaaggagacactggtgcaaaaggcgagccc
ggccctgctggtgtccaaggtccccctggtccagctggtgaagaaggcaagagaggagcc
cgtggtgagcccggccccgctgggctgcccggccccgctggtgaacgtggtgctcctggc
agccgtggcttccctggtgctgatggcatcgctggtcccaagggtccccctggtgagcgc
ggctcccccggcgccgttggtcccaaaggatctcccggtgaagctggacgccctggggaa
cctggtctccctggtgccaagggtctgactggaagccctggaagccccggtcctgatggc
aagaccggtccccctggccccgctggtcaagacggccgccccggacccccaggcccaccc
ggagccagaggccaagctggtgtcatgggtttccctggacccaagggcgctgcaggtgaa
cccggcaaacctggtgagagaggagctcccggtccccctggtgctgttggtgctgctggc
aaagatggtgaagctggtgcccaaggtccccccggccctaccggtcccgctggagaaagg
ggtgaacaaggtcccgctggcgctcccggcttccagggtctgcccggccccgctggcccc
cctggcgaggctggcaagcccggcgagcagggtgtccccggagacgccggcgctcccggt
cccgccggtgccagaggcgagaggggcttccccggcgaacgcggcgtccaaggtcccccy
ggtccccagggtccccgcggtgctaatggtgctcccggtaacgacggtgctaagggtgat
gctggtgctcctggtgctcctggaaaccaagggccgcccggtctgcagggaatgcccgga
gaacgcggtgctgccggcctgccaggcgccaagggtgacagaggcgatcccggtcccaaa
ggtgctgacggtgctcccggcaaagacggtctccgyggtctcaccggtcccatcggcccc
cccggcccagctggtgctcctggtgacaagggtgaagctggtccccccggccctgctggt
cccaccggtgcccgtggtgctcccggagaccgcggcgagcccggcccccctggtcctgct
ggatttgctggccctcccggcgctgacggccagcctggtgctaaaggcgaaactggygac
gccggagccaagggtgacgcgggtccccccggccccgctggccccactggtgctcctggc
cctgccggtgctgttggtgctcccggtcccaaaggtgctcgtggcagcgctggaccccct
ggtgctactggcttccctggtgctgctggaagagtcggtccccccggcccctcgggcaac
atcggcctccccggcccccccggccccagcggcaaggaaggcggcaagggaccccgcggt
gagaccggccccgctgggcgccccggcgagccgggccccgccggcccccccggccccccc
ggcgagaagggctctcctggcgccgacggtcccatcggcgctcccggcactcccgggccc
caaggtatcgccggccagcgcggcgtcgtcggcctgcccggccagcgcggcgagcgcggc
ttycccggcctgcccggcccgtcgggcgaacccggcaagcaaggtccctctggctccccc
ggcgagcgcggtcctcccggccccatgggcccccctgggctcgctggcccccctggtgaa
gctggacgcgagggtgctcctggtgccgaaggtgccccggggcgcgacggtgctgccggt
cccaagggtgaccgtggtgagaccggccctgctggcccccctggtgctcctggtgccccc
ggcgcccccggccccgttggtcctgctggcaagaacggagaccgcggtgagacyggccct
gctggtcccgctggcccccctggtcctgctggtgctcgcggtcctgctggcccacaaggt
ccccgcggtgacaaaggcgaaactggtgaacaaggtgacagaggcatgaagggtcacaga
ggcttctccggtctccagggtccccccggtcctcccggacaacccggtgaacaaggacct
tctggtgcttctggtcccgccggtccccgaggtccccccggctccgccggcgccgccggc
aaggacggtctcaacgggctccccggccccatcggcccgcccggtccccgcggccgcacc
ggtgacgtcggccccgtcggtcccccggggcctcccggccccccaggtcctcccggtccc
cccagcggcggcttcgacttcagcttcctgccccagccgccccaagagaaggcgcacgac
ggcgggcgctactaccgcgccgacgacgccaacgtgatgcgcgaccgcgacctggaggtg
gacaccaccctcaagagcctgagccagcagatcgagaacatccgcagccccgagggcacc
cgcaagaaccctgcgcgcacctgccgcgacctcaagatgtgccacggcgactggaagagc
ggcgagtactggattgaccccaaccaaggctgcaacctggacgccatcaaggtcttctgc
aacatggagacgggagagacctgtgtctacccaacccaggccaccatcgcccagaagaac
tggtacgtcagcaagaaccccaaggagaagaagcacgtctggttcggcgaaacgatgagc
gacggcttccagttcgaatacggcggcgagggctccaacccggccgacgtggccatccag
ctgaccttcctgcgcctgatgtccaccgaggcgtcgcagaacgtcacctaccactgcaag
aacagcgtcgcctacatggaccgcgacagcggcaacctcaagaaggccctgctgctgcag
ggctccaacgagatcgagatccgcgccgagggcaacagccgcttcacctacggcgtcacc
gaggacggctgcacgagtcacacgggagcctggggcaagacagtcatcgagtacaagacg
acaaagacctctcgcctgcccatcatcgacgtggcccccatggacgttggcgctccggac
caggaattcggcatcgacatcggccccgtctgcttcttgtaa
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