Nothoprocta perdicaria (Chilean tinamou): 112951214
Help
Entry
112951214 CDS
T07556
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112951214 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112951214 (COL11A1)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112951214 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
112951214
NCBI-ProteinID:
XP_025899649
LinkDB
All DBs
Position
Unknown
AA seq
1858 aa
AA seq
DB search
MEVQRWSPRWKTKRWLRDPAVTLLIATTLLLRAAEVRGAEPVDVLKALEFHNSPEGVSRT
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPGGDFPEDFSILMTVKPKKGIQSFLLS
VYNEQGIQQIGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKTTKPLERSDKTIVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSVTEGPPLFEETVAQ
TEKKKAKAIKKKRTVAASSKDKPQKATTKKSEKFASRKKKSYQAATKGKLGVKANIVDEF
QEYSIADPDYGYQTEAPSRTTEANEQNPVEEVFAEEYVTGEDYDKKTEETEYGSRGVNLS
ESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVLGHGAYGEKGQK
GEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLPGADGLAGP
PGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGGPGA
AGAKGESGEPGPQGPRGIQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGDRGFDGLPGL
PGDKGNRGDRGPQGPPGLPGEDGLRGEDGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGI
AGVDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKPGLPGLSGS
DGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGF
KGDMGLKGDRGEVGPPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGVPGLPGYPGR
QGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGLKGTAGN
DGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV
VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGF
PGERGLPGAQGPAGLKGGEGPQGPPGPIGSPGERGAAGTAGPIGLPGRPGPQGPPGPAGE
KGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGP
PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGE
KGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGE
SGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQ
DGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGA
PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGASGQDGPPGPLGPPGLPGLKGDPGS
KGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGP
QGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMLSDVGDN
ILDYSDGMEEIFGSLNTLKQDIEHMKYPMGTQSNPARTCKDLQLCHPDFPDGEYWIDPNQ
GCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEG
NSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDATSDSYDKALRFLGSNDEEMSYDNNP
YIKALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgcagagatggtccccacggtggaaaacgaaaaggtggctccgggaccccgcc
gtcaccctgctcatcgcaaccaccctcctcctccgggccgccgaggtccgaggcgctgaa
ccagttgatgtgctaaaagcattagaatttcacaactcgccggaaggagtatcaagaaca
gcaggattttgcacaaatagaagggattcgaaaggatcagatgtcgcctacagagtttca
aaaactgcgcagctcagtgccccaaccaagcagctgtacccaggtggagactttccagaa
gacttttcaatattaatgacggtaaaacctaaaaagggtatccagtccttccttctgtct
gtctacaatgagcaaggaattcagcaaataggtgttgaagttggtagatcccctgtcttc
ctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcaggaccgtt
aacattgctgatggcaagtggcatcgagtagctattagtgtggaaaaaaaaagtgttact
atgattgttgactgtaacaaaaaaacaacaaaaccccttgaaagaagtgacaaaacaatt
gtggataccaatggcatcactgtatttggaactaggattctggatgaagaagtttttgag
ggtgaaatccagcagctgttgattatagccgaccccagagctgcatatgactattgcgag
cattatagcccagactgtgattccccagtgcccaatgctgctcaggctcaagatcctcag
gttgatgagtatacaccagaagattttattgaatatgactatgagtatggggatgcagat
tataaagaaactgactctgtaacagagggacccccactgttcgaggagacagtagcacaa
acagagaaaaagaaagccaaggccataaagaagaagaggacagtggccgctagctcaaag
gacaaaccccaaaaggccacaacaaaaaaatctgaaaaatttgcatccaggaagaagaaa
agttatcaagcagcaacaaaaggcaaactaggggtaaaggcaaatattgtggatgaattc
caagaatatagcatagctgaccctgactacgggtaccagacagaggctccttccagaaca
actgaagcaaatgagcaaaatcctgttgaagaagtgtttgctgaagaatacgtgactgga
gaggattatgataaaaaaactgaggaaactgaatatggaagcagaggagtaaacctcagt
gaatctgatcttctggtagatggcgatttaggcgaatatgatttttatgaatataaagaa
tatgaagagaaaccaactgattctactaatgaggagtttggtccaggtgttcctgcagag
actgatatcacagaaacaagtgtacttggacatggggcttatggagagaaaggacaaaag
ggagaaccagctgtgattgaacctggtatgctcattgaaggcccaccgggaccaagagga
cctgctggtcttacaggtcccccaggtttacaaggtcccgttggtcctccaggtgaccct
ggtgaaaggggtccacctggccgccctggtcttcctggtgctgatggcttagcaggtccc
ccaggaaccatgttaatgttgccattccgctttggtggagatggtgaaaagggtccaaca
atctcagctcaggaggctcaagcacaagccattcttcagcaagctaggattgctatgaga
gggccacctggtcccatgggactcactggaagaccaggccccgtgggtgggcctggagca
gcgggtgctaaaggtgaaagtggtgagccaggtcctcagggtcctcgtggtattcaaggt
gcccctggtccaagtgggaaggctggcaaaaggggacgccctggggctgatggtgccaga
ggaatgccaggagaacctggtgcaaagggtgatagaggattcgatggtcttcctggcctc
cctggtgacaaaggtaacaggggagaccgtggcccacagggaccccctggcttacctggt
gaagatggattaagaggagaagatggagaagttggaccaagaggtctcccaggtgaagct
ggtccacggggattactgggccccagaggtacacctggtccccctggacaacctggcatt
gcaggtgttgatggcccctcaggcccaaaaggaaacatgggtcctcaaggggaaccagga
cctcctggccaacaaggaatcccaggcccccaagggcttcctggtccgcaaggtcctatt
ggacctcctggtgaaaaaggtcctcaaggaaagcctggtcttcctggcctttctggttct
gatggacctcctggtcacccaggcaaagaaggtcagtctggagagaaaggtgcactgggg
cctccaggtcctcagggtccaattggctatccaggtcctcgtggtgtgaagggagctgat
ggtgtccgtggtctcaaaggctccaaaggtgaaaagggtgaagatggtttcccaggattt
aaaggtgacatgggccttaaaggtgaccggggagaagttggcccgccaggtccacgggga
gaagatggcccagaaggtccaaaaggtcgagcaggtccatctggggacccgggagccgct
ggtccagctggggaaaagggaaaacttggtgtgccagggttgccaggatatccaggaaga
caaggtccaaagggctctactggtttcccaggatttccaggtgccaatggagagaaaggt
gcaaggggattacatggcaaaccaggcccacgaggacaacgaggaccaacaggtccaaga
ggctcaagaggccccagaggtcccaccggcaagccaggtctgaagggtactgcaggcaat
gatggtcctcctggcccaccaggtgaaaggggaccacaagggcctcagggaccggttgga
ttccctggaccaaaaggacctccaggcccacctgggaaagatggcctgcctggacaccca
ggacagcggggagagactggtttccaaggaaaaactggtcctcctggtcctggtggggtt
gttggccctcagggtcctacgggtgaaactggcccgattggggaaagaggccatcccggt
cctcctggcccgccaggggaacaaggcctcccgggtgctgcaggaaaagaaggtgctaag
ggggacccaggccctcaaggtattcctgggaaagacggaccagcaggtctccgtggtttc
cctggggaaagaggccttccaggagctcagggtccagctggtctgaaagggggtgaaggt
ccacaaggcccacctggccctattggctcaccaggggaacgcggagcagcgggcactgct
ggcccaattggcttacccggtcgtcctggaccccagggccccccaggccctgcaggggag
aagggtgccccgggtgaaaaaggtcctcaaggtccggctggacgtgacggagtacagggt
cctgtaggtcttcctggtcctgctggtccaagtggctctcctggagaagatggtgacaag
ggtgaaattggtgaaccaggccagaaaggcagtaaaggcgacaagggagaaaacggtcct
ccgggtccaccaggtctccagggtcctgtgggtgccccgggtatagctggtggtgatggg
gagccaggcccaagaggtcagcaaggcatgtttgggcagaaaggagatgaaggtcctcga
ggttttcctggcccaccaggccctattggtttacagggtctacctggcccaccaggtgaa
aagggtgaaaatggcgatgtgggcccaatgggtccacctggccctccaggtccaagaggt
cctcagggccctaatggagctgatggtcctcaaggcccaccaggctcgattggttctgtt
ggaggtgttggtgaaaagggtgaacctggagaagctggaaatcctggacctccgggagaa
tctggcacatctggtccaaaaggtgaaagaggagaaaaaggtgaggctggtccacctgga
gctgctggaccaccaggtgctaaaggacctccaggcgatgatgggcccaagggcaaccca
ggcccagttggttttcctggagatccaggtccccctggtgaacctggtcctgctggtcaa
gatggtgttggtggagagaagggtgaagacggtgatcctggtcaacctggcccaccaggt
ccctcaggtgaagctggcccacctggtccacctggaaagagaggacctcctggagccact
ggtgctgaaggcagacaaggtgaaaaaggtgcaaagggtgaacctggtgcggaaggtgct
cccggaaaaacaggtccagttggtcctcagggacctgcaggaaaacctggcccagagggt
ctccgaggcattcctggccccgtgggagaacaaggtctacctggagcatcaggtcaagac
ggccctcctggacctttgggcccacctggcttgcctggcttgaaaggagatccaggttcg
aaaggagagaagggacatcctggtttgattgggctgatcggacctccaggagaacagggt
gaaaagggtgacaggggtcttcctggcccacagggatctcctggagccaagggtgatgcc
ggaatttctggtcctgctggtccacttggaccccctggtcctcctggtttacctggtcct
caaggtccaaaaggttccaaaggatccagtggtcctgctggtcaaaagggtgacagtggt
ttacctggtccacctggtcctccaggtcctccaggcgaggtcatccagccattgccaatc
cagtcacccaaaaagacaagaagatctcccgactacatgttatccgatgtcggggataat
attctggattattccgatggcatggaggagatctttggctccctgaataccctcaagcaa
gatattgagcacatgaagtacccgatgggcacgcagagcaacccagcccggacctgcaaa
gacctgcagctctgccaccccgacttccccgacggggaatactggattgatcctaaccag
ggctgctctggagactccttcaaggtttactgcaatttcacagcaggtggggagacttgc
atctacccagataagaaatctgaaggagttagaatttcctcgtggccaaaagagaatcca
ggatcttggtttagtgaatttaaaagaggcaaactgctttcttatttggatgttgaaggc
aattccattaacatggtgcaaatgacattcctgaaactactgagtgcctctgccagacaa
aatttcacttacaactgccatcagtcagtagcttggcatgatgcaacatctgacagctat
gacaaagcactgaggttcttaggatcaaatgatgaagagatgtcctatgacaacaatcct
tacatcaaagctcttcacgatggctgtgcgtcacgaaagggctacgcaaagacggtgatt
gaaatcaacacacccaaaatagaccaagtgcctatcgttgatgtcatgatcaatgacttt
ggtgatcagaaccagaagtttggatttgaggtcggtcctgtctgtttccttggttaa
DBGET
integrated database retrieval system
