Nothoprocta perdicaria (Chilean tinamou): 112951532
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Entry
112951532 CDS
T07556
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
npd03000
]
112951532 (RC3H1)
04121 Ubiquitin system [BR:
npd04121
]
112951532 (RC3H1)
Transcription factors [BR:
npd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
112951532 (RC3H1)
Ubiquitin system [BR:
npd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112951532 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf-CCCH_4
zf_CCCH_4
Baculo_IE-1
PaaA_PaaC
Vesi_VP2
zf-RING_4
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
112951532
NCBI-ProteinID:
XP_025900032
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MKTDSYVSHYVLTVCTYRRYLKTNRLFFPKKKIDSSGICALKFLSRQLTPEAMPVQAPQW
TDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNS
ALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVGLNSTTQSV
LSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAVR
ARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQL
LYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLY
GDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELLANIDPSPD
APPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCRDMKQRGGC
PRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSDEGGVDLPNR
KTSALPNGIVSTGSTVTQLIPRGTDCSYETALKPGKMDHLSSSAPGSPPDLLEPVPKSSI
SALPVNPHPVPTRTPTDLPSVSVTKQLQMVPRGSQLYNTQQADVFYQDPRSAVPPFEPAP
YQQGVYYPTQSSQCMSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVSPQYTQPQQYPPMGQ
PIYPPHYDSRRVYPPIQPYQQEELVRGNPVPIEIPQAAVPSYIPESRDRYQQMEGYCPVA
PHLSQIRPPCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSEEYLDE
DLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANADSKAMRDQRLD
MQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQGASTKSIISDYS
PYGTHGSWGGAPYSPHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQQLRMELQQVD
HQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPPPPPPKWPGMISSEQLSLELHQVERE
IGKRTRELSMESQSSLDIKNKLGATKQTENGQLEPQSKVPADDLALTFSSDVPNGSALTQ
ENISLLSNKTASLSLSEDPEGGGDCHDSQRAGVTPTSAP
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgacagttatgtttcacactatgtgctgactgtctgtacttacagaagatat
ttaaaaacaaacagacttttttttccaaaaaaaaaaattgattccagtggaatctgtgct
ttgaaatttttgtcccgtcaattaactcctgaagcaatgcctgtacaagctccacagtgg
acggattttctgtcctgcccaatttgcacacagacgtttgacgaaacgatccggaagccc
atcagcttgggttgcggccacactgtctgcaagatgtgcctcaacaagctccaccgtaag
gcatgcccttttgaccagaccactatcaatacagacattgagctccttcctgtgaattca
gcattgctgcagcttgtgggtgctcaggttccagagcagcagccaattacattatgtagt
ggagctgaagataccaagcattatgaggagggcaagaaatgtgtggaagaattggcattg
tacctcaaaccactcagcagtgccagaggtgtgggtcttaacagtactactcagagcgtg
ctaagtcgtcccatgcaaaggaagctggtgacgttggttcattgccagctagtcgaggaa
gaggggcgcatccgagccatgcgtgccgcgcgctcgcttggtgaaaggaccgtgacagag
ctcatcctgcagcaccaaaacccacagcagctctcttccaacctctgggctgcggtgaga
gccagagggtgccagttccttgggccagcaatgcaggaggaggctttaaagctggttttg
ctggctctggaagatggatctgctttgtcacggaaggttttggttctctttgtggttcag
aggctggagccgcgatttccacaggcttctaaaactagcattggacatgttgtccagctt
ctttacagagcctcctgcttcaaggtgacaaagcgtgatgaggattcctccctaatgcaa
ctgaaggaggaatttcggacttacgaagctctgagaagggaacatgattcccagatagtt
caaattgctatggaagcaggtttacgcattgcaccggatcagtggtcctcactgttatat
ggagaccagtctcacaaatcccacatgcagtctattattgacaagttgcagaccccagcc
tcatttgcacagagtgttcaggaattgactattgctctccagaggactggagatccagct
aacctgaatcgtcttcgacctcacctggaactgctggcaaatatcgatcccagtccagat
gctccacctccaacatgggaacaactggaaaatgggctagttgctgtgagaactgtggtt
catggcttagttgattatattcagaatcacagcaagaaaggaacagaccagcaacagcct
cctcagcacagcaagtacaagacatatatgtgccgagacatgaagcagagaggaggctgc
ccccgaggggctagctgcacctttgcacattcgcaggaggaactagaaaagtttcgcaaa
atgaacaagcgtctggttccccgaaggccactgagtgcctccttgggccagctgaatgag
gtgggcctgccttccggagctatcctctcagatgaagggggagtggacttgcctaatagg
aaaacctctgccctgcccaacggaattgtgtcaacaggcagcacggtgacacagctcatt
ccccgagggactgactgcagctacgaaacagctctgaagccagggaagatggaccacctg
agcagcagtgcccctggatctccccctgacttgttggaacctgtccccaagagctctatt
tctgccttaccagtgaaccctcatcctgtgcccactcggacaccaacagatttgccttca
gtgtcagtcaccaaacagttacagatggtaccacgaggctcccagttgtataatactcag
caagcagatgtgttttatcaagatcctagaagtgctgtcccaccatttgagccagcacct
tatcagcaaggagtttactatcctactcagtcttcgcagtgcatgtctcgctttgtccga
cctcctccatcagctcctgaacctggcccaccttatctagaccattacccaccttacctt
caggaccgtgtggtgagcccacagtacacgcagccgcagcagtaccctccaatggggcag
cccatttatccacctcactacgacagccgtcgagtctatccccctatccagccatatcag
caagaggagcttgtccgaggaaacccggtaccgattgaaattccacaggcagctgtaccc
tcctacatacctgaatccagggacagataccagcaaatggagggctattgccccgtggct
ccacatctcagtcagatcagacctccatgccacagacctcatcccagcctggatgaactt
caccgccgaaggaaggagatcatggcccagctagaggagaggaaggtgatttctccccct
ccatttgctccttcaccaaccttgcctcatcctttccattcagaggagtatttggatgaa
gacctgaaggtagctgggaaatacaaaggcaacgactacagccagtattctccctggtcg
tgtgacaccatcggctcctacattggaaccaaagatgcgaaacccaaagatgttgtggca
gcaaggagtgtggaaatggcgaatgcagatagtaaagctatgcgtgaccagcgattggac
atgcagagaagagcagcagagacgggggacgatgatcttattccgtttggagaccgacca
actgtgtcaagatttggggctatctctcgtacttccaaagcgatgtaccagaatagtggt
cccatgcaggccatggcggttcagggagcttccaccaaatctatcatttcggattacagt
ccttatggaacgcatggtagctggggaggcgctccatactctcctcatcaaaatatacct
tctcagggacgtttcaatgacagggagagactgtcaatgtcagatgttgctggtcatggg
aagcagttaccctcggctgagcgggagcagcagctgcggatggagctgcagcaagtagac
catcaaattagccagcagacacaaatgcgaggactagaggctgttagtaacaggctgctg
ttgcagagggaggcgactaccctggcaggccaaccacagcccccacccccacctcccaag
tggcctgggatgatctcaagtgagcagctgagcttggagctacaccaggtggaaagggaa
attgggaagagaacccgtgagctgagcatggagagccagtcttcattggatataaaaaac
aaactgggcgccactaaacagacagaaaatggacaattagaaccacaaagcaaggttcca
gctgacgaccttgcactgacgttcagcagtgatgttccaaacggatcagccttgacacaa
gaaaacatcagcctcctgtcgaacaagaccgcgtctctgagcttgtcggaggacccggag
ggcggaggagactgccacgactcccagagagcaggagttacacccacgtctgctccttga
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integrated database retrieval system
