Nothoprocta perdicaria (Chilean tinamou): 112951986
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Entry
112951986 CDS
T07556
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112951986 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npd03019
]
112951986 (PNLDC1)
Enzymes [BR:
npd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112951986 (PNLDC1)
Messenger RNA biogenesis [BR:
npd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112951986 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
112951986
NCBI-ProteinID:
XP_025900541
LinkDB
All DBs
Position
Unknown
AA seq
532 aa
AA seq
DB search
MEVGAAGFERRLPRLRRRLQRAAFLGLDMEFTGLHSALPLNNKPSLFDSPAEWYVKARQS
VQRFTVSQFGLAIFSHEKPNKYVVHSYNFYLFPSTFGATDPEFTLSASSIRFLSHYGFDY
NKFLKDGIPYMNELQEKSLRQYLSAGSWKVHSVLDRDSMKKAIDEVTCWIGGAEEEETMI
LRDLSGFQRFEVQLVLRQALQNVWTQPLGDHEVMVKKVSPQHRRLLENSPRDSCRXELIL
ASARGFTNLFQALVKAKKPLVGHNMLMDLLHLHDKFYKPLPESYEEFKRNIHSLFPVIID
TKTVTKSVWKNHPFPRVSNLLEVYEVLCSSDLNPTDPTCPVIVLASGCSRYAEKSSPHEA
GYDAFLCGSVLLKVAHLLLCGSSGVTAENDPSFPEYLGALVKCQNQVHFSGGGVCSLNFS
GADVPCRRPPLLVVRIQGCRGLSEWHIYHELKTLCHFHVKRLSENQFILQSNKFKHTRLA
LRDYKDHPHLQISLYRHWRHSPNISCLLQVSSIVALWSLVAFVLGRAPCHSV
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgggcgcggcgggcttcgagcggcgcctgccgcggctgcggcgccgcctgcag
cgcgccgccttcctggggcttgacatggagtttacaggcctgcattcagccctcccactg
aataacaagccaagtctgtttgattccccggccgagtggtacgtgaaggccaggcagagc
gttcagcgcttcacggttagtcagttcggactggcgattttctcacatgaaaagccaaac
aagtatgtggtgcattcatacaacttttatctctttccctcaacatttggagctacggat
cctgaattcaccctctctgcatctagcattcgcttcctgtctcattatggctttgactat
aataagttcctgaaagatggaatcccctacatgaatgagttgcaggagaagagccttagg
cagtatctctcggcaggaagctggaaagtccacagtgtcctggacagggacagcatgaag
aaggccattgatgaagtgacatgctggatmggaggagcagaggaagaggagactatgatt
ctgcgggatctgagtggttttcagaggttcgaagttcagctcgttctgaggcaggctctt
caaaatgtttggacacaacctcttggggaccatgaggtgatggtgaaaaaagtgagtcca
cagcatcgccggcttctggagaactctccccgtgactcctgccggraagagctcattctt
gcatctgcccggggcttcaccaacctcttccaggcccttgttaaagccaagaagccgctg
gtgggacacaacatgctcatggaccttctgcaccttcacgacaagttctacaagcccctt
ccagaaagctatgaggagtttaaaaggaacattcacagcttgtttcctgtcatcatagac
accaagactgtaacaaagtctgtctggaagaatcayccatttcctcgagtatctaatctg
ttggaggtgtatgaggttttgtgcagcagcgacctaaatcccacagatccaacgtgccca
gtgattgttctcgcaagtggctgctcaagatatgctgagaagtcgtcgccccatgaggca
ggctacgatgcctttctctgtggctcagttcttctgaaagtagctcacttgctactgtgt
ggatcatcaggtgtcacagcagagaatgatccttctttccccgagtatctcggcgcgttg
gtcaagtgccagaaccaggtgcatttcagcggcggcggcgtctgcagcctcaatttttcg
ggggcagatgtgccttgccgacgtccccctctcttggttgtccgcatccaaggctgtcga
gggctcagtgaatggcacatttaccatgagttaaaaaccctctgtcactttcatgtcaaa
cggctttcagagaaccagttcattttgcagtccaataaatttaagcacaccaggctggcc
ctgcgcgactacaaggaccacccccacctgcagatttctctctatcgccactggaggcac
tcgccgaacatcagctgcctcctgcaagtctccagtattgtggcactgtggtctctcgtg
gcctttgtacttggaagagctccttgccattcagtgtga
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