KEGG   Nothoprocta perdicaria (Chilean tinamou): 112952236
Entry
112952236         CDS       T07556                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
npd  Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04510  Focal adhesion
npd04512  ECM-receptor interaction
npd04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:npd00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    112952236 (COL2A1)
   04518 Integrin signaling
    112952236 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    112952236 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:npd00536]
    112952236 (COL2A1)
Glycosaminoglycan binding proteins [BR:npd00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   112952236 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 112952236
NCBI-ProteinID: XP_025900842
LinkDB
Position
Unknown
AA seq 1283 aa
MGPRGPPGPTGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGE
RGAPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGP
RGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGP
EGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA
TGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPIGP
PGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGR
PGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA
PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGV
PGEAGTPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGP
PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGE
SGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGNPGP
QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGK
DGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGL
PGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGTPGSDGP
PGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGA
RGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGP
PGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAG
LGQTEKGPDPMRYMRADEAAGGLRQHDAEVDATLKSLNNQIESIRSPEGSKKNPARTCRD
LKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGETCVYPTQATIAQKNWYVSKNPKEK
KHVWFGETMSDGFQFEYGGEGSNPADVAIQLTFLRLMSTEASQNVTYHCKNSVAYLDEET
GDLKKAVLLQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVD
IAPMDIGGAEQEFGVDMGPVCFL
NT seq 3852 nt   +upstreamnt  +downstreamnt
atgggaccccgtggccctcccggtcccaccggctctcccggtccgcaagggtttcaaggc
aaccccggagagcccggagagcccggcgctgccggtcccatgggtccccggggaccgcca
ggacctcctgggaaacctggtgacgatggcgagacaggaaaacccggcaaatccggtgaa
cgtggcgctcccggcccccagggtgctcgcggcttccctgggacaccgggactgcccgga
gtgaaaggccaccgtggctaccccggcttggacggcgccaaaggagaggcaggagctccc
ggagccaagggtgaatccggttccccgggcgagaacgggtcacccggccccatgggtccc
cgcgggctgcccggcgagcgaggacgtcccggcccctccggcgctgccggtgctcgtggc
aacgacggcctccccggacctgccggcccccccggtcccgtcggcccggccggagccccc
ggcttccccggcgcccccggctccaagggtgaagctggacccaccggcgcacgaggaccc
gagggtgcccagggcccccgcggcgaatccggcacccctggctctcccggccccgccgga
gcacccggtaaccccggcaccgacggcatccccggcgccaaaggatcggcgggcgccccc
ggcatcgcgggcgctccaggcttccccggcccccgcggcccccccggcccccagggcgcc
accggcccgctgggacccaagggacagacgggagaacccggcatcgcgggcttcaaaggc
gagcaggggcccaagggcgagacgggccccgcaggaccccagggcgctcccggaccggcc
ggcgaggaaggcaagagaggagcccgcggagagcccggcgctgccggccccatcggaccc
cccggcgagcggggagctcccggcaatcgcggcttccctggacaggacggattggctgga
cctaagggtgctccaggtgagcgcggtcccgccggcctcgcgggtcccaagggagccact
ggagatcccggccgtcccggagagcccggcctgcccggagccaggggcctcaccggccgc
ccgggcgatgctggaccgcaaggcaaagtcggcccaactggagcccccggggaggacggg
cgccccggcccccccggaccacaaggtgctcgcggacaaccaggtgtcatgggattccct
ggccccaagggcgctaatggagagcccggaaaagctggcgagaagggacttcctggggcc
ccaggactgagaggtcttcctggcaaagacggcgagacgggagctgccggcccaccgggc
cctgcgggtccggctggtgagagaggagagcaaggagcccccggaccctcgggcttccag
ggtcttcccggccctccaggtcccccaggagagggtggcaaacccggagaccagggtgtt
cctggagaagccggcactccaggtctcgtcggtcccagaggtgaacgcggcttccccggc
gaacgcggctctcccggtgcccaagggctgcagggtccccgcgggcttcccggcactcca
ggcaccgatggacccaagggagccaccggccccgccggccccaacggcgcccagggaccc
cccgggctgcagggaatgccgggcgagcgcggagctgccggaattgccggccccaaggga
gaccggggagacgtcggcgagaagggacccgagggagcccccggcaaggacggcgcgcgg
ggtctcaccggccccatcggcccccccggtcctgctggtcccaatggagagaagggtgaa
tccggaccccctggcccgtccggcgctgctggcgcccgcggtgctcccggtgagcgtgga
gagcccggtgctcccggtcctgccggatttgccggcccccctggcgcagatggacaaccc
ggtgctaagggtgagcagggagagcccggacagaaaggtgacgccggcaatcccggtccc
caaggtccttctggcgctcctggcccgcagggtcccaccggagtgacaggtcccaaagga
gcccgtggagcccagggtccccctggagccaccggattccctggtgctgctggacgtgtg
ggaccacctggccccaatggcaaccccggcccccccggcccccccggatctgctggcaaa
gacggtcccaaaggagctcgcggcgacgccggcccccccggccgggccggagaccccgga
ctccagggccccgctggcccccccggagagaagggcgaacccggcgaggacggacctgcg
ggtcccgatggcccccccggcccccagggtctggcaggacaacgtggcatcgtggggctg
ccagggcagcgtggcgagaggggcttccccgggctgccgggaccctcgggcgaacccggc
aaacaaggagcccccggatcagcgggtgaccgtggcccccccggccccgtgggccctcct
gggctgacaggtcccgccggagaacctggacgtgagggcacccccggctccgatggcccc
cctggcagagacggcgccgccggtgtcaagggtgaccgcggggaaacaggacctgtgggt
gctcccggcgctccgggcgctccgggcgctcccggccctgtgggtcccactggcaagcaa
ggagatcgcggtgagacgggcgcccaagggcccatgggtccctccggccctgccggagct
cggggaatgccgggtccccaaggcccccgcggggacaagggcgagaccggcgaggctgga
gagaggggcctgaagggtcaccgcggcttcaccggcctgcagggccttcccgggcctccc
ggtccctctggagatcagggtgctgctggtcccgccggtccctccggtcccaggggtcct
ccaggccccgtcggtccctccggcaaagacggctccaacggcatgcccggccccatcggt
cctcccggcccccgcggccggagcggggaaccgggtccggcgggtcctcccggaaacccc
ggtcctcccgggccccccggcccccccggcaccggcatcgacatgtcggcgttcgccggc
ttgggccagacggagaagggccccgatcccatgcggtacatgcgtgcggacgaggcggcc
ggcgggctgcggcagcacgacgccgaggtggacgccacgctcaagtccctcaacaaccag
atcgagagcatccgcagccccgagggctccaagaagaacccggccaggacctgccgcgac
ctcaagctctgccaccccgagtggaagagcggcgactactggatcgaccccaaccagggc
tgcaccttggacgccatcaaggtcttctgcaacatggagacgggagagacctgtgtctac
ccaacccaggccaccatcgcccagaagaactggtacgtcagcaagaaccccaaggagaag
aagcacgtctggttcggcgaaacgatgagcgacggcttccagttcgaatacggcggcgag
ggctccaacccggccgacgtggccatccagctgaccttcctgcgcctgatgtccaccgag
gcgtcgcagaacgtcacctaccactgcaagaacagcgtggcctacctggacgaggagacg
ggcgacctcaagaaagccgtgctcctgcagggctccaacgacgtggagatccgcgccgag
ggcaacagcaggttcacctacagcgtcctggaggacggctgcacgaaacacactggcaaa
tggggcaagacggtcatcgagtaccggtcgcagaagacctcgcgcctgcccattgtagat
attgcacctatggacattggcggagccgagcaggagttcggcgtggacatgggccccgtc
tgcttcttgtaa

DBGET integrated database retrieval system