KEGG   Nothoprocta perdicaria (Chilean tinamou): 112952555
Entry
112952555         CDS       T07556                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
npd  Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03030  DNA replication
npd03410  Base excision repair
npd03420  Nucleotide excision repair
npd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:npd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112952555 (RFC4)
   03410 Base excision repair
    112952555 (RFC4)
   03420 Nucleotide excision repair
    112952555 (RFC4)
   03430 Mismatch repair
    112952555 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:npd03032]
    112952555 (RFC4)
   03036 Chromosome and associated proteins [BR:npd03036]
    112952555 (RFC4)
   03400 DNA repair and recombination proteins [BR:npd03400]
    112952555 (RFC4)
DNA replication proteins [BR:npd03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    112952555 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    112952555 (RFC4)
Chromosome and associated proteins [BR:npd03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    112952555 (RFC4)
DNA repair and recombination proteins [BR:npd03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     112952555 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    112952555 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 AAA_30 AAA_16 AAA_22 AAA_11 AAA_24 Mg_chelatase DUF815 SLFN-g3_helicase AAA_14 AAA_28 RuvB_N BBIP10 AAA_19 AAA_5 TIP49_C ResIII AAA_7
Other DBs
NCBI-GeneID: 112952555
NCBI-ProteinID: XP_025901223
Ensembl: ENSNPEG00000002942
UniProt: A0A8C7E9N5
LinkDB
Position
Unknown
AA seq 362 aa
MQAFLKGPAALNTKPPAAKERGAAGSGGEARRPRPVPWVEKYRPKSVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK
VKAFAQLTASGTRADGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDKIQQQRVLDVAEKEHVKISGEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIVTEIAGVIPKETIDGVILACKSFSFEKLERMAKNLINEGYA
VAQLVNQFHDIVVESEDFSDKQKSAIVEKLADVDKCLADGADEYLQLMGLCALVMQQLSQ
SS
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctgaagggcccggccgccctgaacaccaagccgcccgccgccaaggag
cggggcgcggcgggcagcggcggcgaggcccggcggcccaggcccgtgccctgggtggag
aaatatcgccccaaatctgtggatgaagtcgctttccaggatgaggtggttgctgtgctc
aagaagtccttggaaggtgctgatctccctaatctgttgttttatggcccacctggaact
ggaaagacttccacgattttagcagcagctagagaactctttgggcctgaattattccgg
caaagagtccttgagctaaatgcttctgatgagcgtggaatccaagtgattcgggagaag
gtgaaggcttttgcccagctaactgcatctggaacccgggcagatggtaaagtttgtccc
ccatttaaaattgtcattctggatgaagcggactcaatgacttcagcagcccaggcagcc
ttaaggcgcacaatggaaaaagaatctaaaacaacacggttttgcctcatttgtaactac
atcagcagaataattgaaccattaacatctcgatgttccaaattccgcttcaaacctttg
tcagacaaaatccagcagcagagggtattggatgttgctgaaaaagaacatgtgaaaatc
agtggtgaggcagtatcttaccttgttaaagtgtcagaaggagacttaagaaaagcaatt
acttttcttcaaagtgcaactcgcctgatgggcggtaaagagatcacagagaagatagtc
actgagattgctggggttatccctaaagaaacaattgatggagtgatcctggcttgtaag
agtttttcatttgaaaaactggaaagaatggcaaagaatctgataaatgaaggttatgct
gttgctcagcttgtaaaccagtttcatgatattgttgtcgagagcgaagatttctcggac
aagcagaaatccgctatagttgagaaacttgcggacgtggacaagtgcctggctgatggt
gctgacgagtacctgcagctcatgggcctctgtgccctggtgatgcagcagctcagccag
agcagctag

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