Nothoprocta perdicaria (Chilean tinamou): 112952646
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Entry
112952646 CDS
T07556
Symbol
COL6A6
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04510
Focal adhesion
npd04512
ECM-receptor interaction
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112952646 (COL6A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112952646 (COL6A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112952646 (COL6A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npd04147
]
112952646 (COL6A6)
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112952646 (COL6A6)
Exosome [BR:
npd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112952646 (COL6A6)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112952646 (COL6A6)
Hyaluronan
Extracellular matrix or blood plasma proteins
112952646 (COL6A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
VWA_CoxE
vWA_SIBA-E
DUF3135
Motif
Other DBs
NCBI-GeneID:
112952646
NCBI-ProteinID:
XP_025901326
LinkDB
All DBs
Position
Unknown
AA seq
2345 aa
AA seq
DB search
MADWKPLLILLFAITCCSIDAQQTAFPEQYADVIFLIVSPETMTTSAFEEVKNLISETVR
QLDVGLNKYSIGLAQFSGVGQVEFVLNTYEKKEEILGHIQRITAFAEGSLQTGSILEFLL
ETFFVDEAGSRLSEGTPQVVVFIAPSGARDDIMEATWELEEMGVKVFPIATESFRGEVQL
GAAPRAPYEKIYEAEVIDHEQKKVVTDIEVSVQKLYDIEDSSAPAVCSSATIADIVFLVD
ESSKIGSKNFQLIRTFLLKVVKALDIGSSNVRVGLVTYSNEPRLEFTLDTFKNKLEILNY
LKNLPYRGGQPYTGKAIEFLRKMVFTKGAGSREKQGAQQIAVVITDGQSLDNYIEPASKL
RRRGVTVYAVGIQNTTESGKLDKIATYPPNKHVFNLKFFLQLSNIGWKIKKRLCNEIVTK
TFVVPSQIQNLKEGCKETEEADIYFLVDGSGSINVSDFKDMKTFMNETIRMFQVGANMVR
FGVVQYAETTRTEFVIGQHNSIKALSEAIWNIWQIGGGTQTGNALRFMKSLFKKTVRNNV
PQILVVITDGESQDKVAQSAKELREQNIVILAIGVKNAVQRELEEIAGTKDKVFLVNDYN
SLMLIKHDIVQDICSMNVCKNLRADIVFLVDSSGSIHPAEFQRVKKFTQSVVSGVEVGLD
AVRFGLLQFSSDVREEFQLDRYSSTPALHRAIQEMQQMKGGTLTGKALSFAASYFDRDRG
GRPELKQYLIVITDGESQEPVKMPAKAIRDKGIIVYAIDMLRANNSQLVEIAGTQDRVFL
ENNLEFLNKKILFEICSQENLCKRAEVADIMFAVHVSSGITALQLKSVQRLLEAVVNGSI
VGADKVRFGALVYSSKQKVHFSLSSYFSKARIRGAIFNLKPLPGQPLTARALNFARQRFG
VSYGGRASSHAVTRILILVTDEPTAPSDRANLPAALRALKEDGINLVAVGMSTASKAEFQ
EVLGNKEQLLFVQSYDALESIQENLMQIVCEKSKPVCSHQLADLVFLIDGSESISENNFS
IMKNFMKEIVDSFIVSKDDVHVGVVQYSQDPQKEFSLKDFYTSTSIKDQIDSIVQLRSST
YTGKGLRFVRSLFEPANGSRIRQGVSQNLIVITDGYSADEVDDAAMALRREGILLFAVGV
GTINSFELLRIAGDAKRVFTVESFDALKTIKRHIVEEVCESGDRPSKECDIDLSVGIDIS
GHTQPGSTLHLKQSLRTFLPRLLLQMTSLPNISCTAGSPPNIRFRFQVLSQTNQIVFDSD
FEDYSEEITQKFLDAQTSVNTYLNADMLQAFGEKFFTVTSDKVKILLIFSDGLDDSLDNL
RKAATSLHIKGLDALLIVGVSNTQNLTELREIEFGRGVGYNEPLSVGFANIASILKRNLD
IIAERKCCNVCCKCLGEIGNHGDRGYPGMKGSTGYKGSPGHPGEEGGIGERGPVGFNGTQ
GDRGCPGARGYKGSRGYQGSQGEHGEHGIDGIDGEQGERGSPGASGEKGRPGRQGRKGPK
GESGERGEPGLRGDHGEPGISNNVRGPVGEKGNSAQQGDPGPPGLRGGPGRAGANGAEGR
RGPPGLKGEQGDLGDPGYVGDPGFPGPQGPRGTQGIRGPPGPKGMPGPMANPGPPGPLGS
DGRQGARGRKGEPGDPGEKGVVGPAGQRGMPGMDGRDAYGPEGIKGAKGESGFIGYPGAQ
GENGDPGVPGIKGSKGVRGRRGNAGTPGSAGDPGDQGPPGPMGTKGPKGIFAMEPCELVS
FTRANCPCSSDTCPVYPTEVVFALDMSEDVTPAAFERMKNIVLSLLGNIKISESNCPTGA
RVSVVSYNANTRYLIRFSEFQKSHLLLQAVQRIPLERSTGRRNIGAAMRFVARNVFKRVR
QGVLTRKVAVFFANGPSQEGDVINTAVLEFSALDITPVVIAFSEVPNVRRAFSIDDTGRF
QLFVWERQQSENLETIVYCTLCYDKCKPNASCEVSIPPPVPVDVDIAYIMDSSSSVGREE
FQKAKDFVHNMLDQFVITPQPRESPGGTRVALVQQAPRGFLPGRSQSPVALEFDLVTYSN
KDSMKKHIQESVRQLEGPSAVASALQWTVENVFFKAPMQRKHRVIFTILGSQTSKWDRER
LREISLGAKCRGFTVFTLALGSGVSDWELTELSSSPVEQHSLSLGRVSTSELAYAQRFSR
AFLSLLQQEMNNYPSPELQEECENLDRGDAQQQTSIIERVPFPGSDETDYSRVLEEVAST
ENRTLEETIRTNTQLAPALPKMEYDYEENENFTEESGEEAPQEYGEAQEENEENLEATIE
TTTAYNVPDTCDLPQDSGECQDYVLKWSYNKWQNTCDPFWYGGCGGNKNRFETEDECKVL
CIGSF
NT seq
7038 nt
NT seq
+upstream
nt +downstream
nt
atggctgactggaagccactacttattcttctctttgcaatcacctgctgctctatagat
gcacagcagactgcctttccagaacaatatgctgatgttattttccttattgtctctcct
gagactatgacaacttcggcttttgaggaagtaaaaaatcttatctctgagacagttagg
cagctagatgttgggcttaacaagtacagcattggccttgcccagtttagtggggtagga
caggtggagtttgtactgaacacatatgaaaagaaagaagagatacttggccacatacag
cgcatcactgcattcgctgaaggctccttgcaaactggaagtatcctggagttcttgctg
gaaaccttttttgtggatgaggctggaagccgactcagcgaaggcactccacaagtcgtg
gtgttcatcgcaccctccggagccagagatgatatcatggaggcaacttgggagctagaa
gagatgggggtaaaagttttcccaattgctactgaaagctttcgtggggaagtacagttg
ggagccgccccccgcgcaccttacgaaaagatttacgaagcagaggtcattgatcacgaa
cagaaaaaggttgtcaccgatatcgaagtctctgttcagaagctttatgatattgaggat
tcaagtgcaccagcagtgtgttccagtgcgactattgccgatattgtgtttcttgtggat
gaatccagcaaaattgggtcaaaaaacttccagctcattaggacctttctgttaaaagtt
gttaaagccctggatattggctcaagcaatgtaagagttggattagtgacgtacagtaat
gaaccaaggctagagttcaccctagacacattcaagaataaactggaaatcctgaactac
ctgaagaacttaccctatcgaggaggacagccttacactggaaaagccattgaattcctg
agaaagatggtttttactaaaggagcaggtagcagggaaaaacaaggagcgcagcaaatt
gctgtcgttatcactgatggccagtccttggataattacattgagccagcatctaaacta
aggcgtagaggtgttactgtctatgctgtggggatccagaataccacagagagtggcaaa
cttgataaaattgcaacttatcctccaaacaaacacgtcttcaacctgaagttttttcta
cagctgtcaaatattggatggaaaataaaaaaacgactttgtaatgagattgtgacaaaa
acctttgtagtcccatcacaaatccagaatctgaaagaaggttgtaaggaaacagaggaa
gctgacatttatttcttggttgatggctctggcagcataaatgtatctgatttcaaggac
atgaaaaccttcatgaatgagacaatcagaatgtttcaagttggtgccaacatggttcgt
tttggcgttgttcaatatgcagaaacgacaaggacagaattcgtgattggccaacataac
agtataaaagccttatcagaggcaatttggaatatttggcaaataggtggaggcacccaa
actggaaatgcattaaggtttatgaaaagtctgttcaaaaagactgtcaggaacaatgtt
ccacagatcctggtagtgattacagatggcgaatcgcaagataaggtggctcaatcagca
aaagagctgagggaacaaaatattgttatattggccattggtgtcaagaacgctgttcag
agagagctggaagaaatagcggggacaaaagacaaagtattccttgtgaatgactacaat
tccctgatgcttattaaacatgacattgtgcaagatatctgttcaatgaatgtttgtaag
aatttgcgagccgacatagttttcctggtggacagctccgggagtattcatccagctgag
tttcagagagtgaagaaattcacacagtcagtggtgagcggagtagaggttgggctcgat
gccgttcgattcggcttgctgcagttcagctctgacgtcagagaggagttccagcttgac
agatacagcagcacgcctgccctgcacagagccattcaggagatgcagcagatgaaagga
gggacacttactgggaaagcactgtcctttgctgcctcttactttgaccgagacaggggt
gggcggcccgaactcaaacagtacctcatagtgatcactgatggggagtcccaagaacca
gtgaaaatgccagccaaggccatacgggacaaaggtatcatcgtctatgccattgacatg
ctgcgggcaaacaattcccagcttgtggagattgctggaactcaagacagagtgtttctt
gagaataaccttgaattcctgaataagaagattctctttgaaatttgcagtcaagaaaat
ttgtgcaaaagggcagaagttgctgatatcatgtttgcagtgcacgtatcatctggcatt
acagccctgcagctgaagagtgtgcagcgtctcctggaagcagtggtcaatggctccata
gtcggagcagacaaggttcgcttcggtgctttggtgtatagctccaaacagaaggtgcat
ttctcacttagctcgtacttctccaaggctcggatcagaggggcaatattcaacttgaag
cctctgccaggccagcccctcacagcaagagctttgaactttgccaggcagagatttggc
gtgagctacggtgggcgagcgtcttctcatgccgtcaccaggatcctcattctcgttact
gatgaaccaaccgctccatcggatagagcaaaccttcctgcagctctaagagctttgaag
gaagatggaatcaacttagttgctgttggaatgagcacggcaagcaaagcagaatttcag
gaggttcttggaaataaagaacaattactctttgtacagagctatgatgcactggaaagc
atacaggaaaaccttatgcagatagtgtgtgagaaatctaagccagtttgcagccatcaa
ttggcagatctggtattcttgatagatgggtcagaaagcatatcagaaaataacttttct
atcatgaagaatttcatgaaggaaattgtggacagttttattgtttcaaaggatgatgta
catgttggagtagtgcagtacagccaagacccacagaaagaattttctcttaaggacttc
tataccagcaccagcataaaggaccagatcgacagcatcgtgcagttgcggtcctctacg
tacactggcaaagggctgcggtttgtccggagcctttttgagcctgccaatggaagccgc
attagacaaggagtctcccagaacctgattgtgattacagacgggtattctgctgacgag
gtggacgatgcagccatggctttgaggagggagggcatccttctctttgcagttggcgta
gggaccataaactcttttgagctgcttcgaatagctggtgatgcaaagagagtgttcaca
gtggagagctttgatgcactgaaaaccatcaagaggcacattgttgaagaagtctgtgaa
tctggggatcgtcctagcaaggaatgtgacatagatctttctgtaggaattgatatttca
gggcacacacagccaggatccacgctgcatctgaaacagagtttaagaacattcctcccc
agacttttactccagatgacatcactgcccaatatcagctgtactgctggctctccaccc
aacattaggttcaggtttcaagtcttgtcacagaccaatcaaattgtctttgactctgat
tttgaagactatagtgaagagatcacccagaagttcttagatgcacagacttccgtaaac
acctaccttaatgcagacatgctacaggcatttggggagaagttctttactgtgacctct
gataaagtgaagattctgttaatattttcggatggattggatgattcactggataatcta
agaaaagcagccacctcccttcatatcaaaggccttgatgcacttttaatagttggtgtg
agcaatacacagaacttgaccgaacttcgggaaatagagtttggcagaggggttggatac
aacgaacctctgagtgttggatttgcaaacattgcaagcatcttgaagagaaacctcgat
attattgcagaaaggaagtgctgtaatgtctgctgtaaatgccttggagaaatcggtaat
catggtgaccgtgggtaccctggtatgaagggaagtacaggttacaaaggatctcctggc
catcctggtgaggaaggtgggattggagagagaggtccagtgggcttcaatgggactcaa
ggagacagaggatgtccaggtgccagaggttataaggggtccagaggctatcagggaagc
cagggtgagcatggtgagcatggaatcgatggcattgatggagaacagggagaacgtgga
tctcctggtgcttctggtgagaagggcaggccaggaaggcagggcagaaaaggccccaaa
ggagaatctggtgagcgaggagaacctggtctaagaggagatcatggggaacccgggatt
agcaataatgtgcgtggtcctgtgggtgaaaaaggaaactcagcacagcagggggatcca
ggaccaccaggactccgaggaggcccaggtcgtgctggtgctaatggtgcagaaggtcga
agaggccctccaggcttaaagggtgagcaaggagatctgggagacccaggctatgtagga
gaccctggttttccaggcccacagggcccaagaggaacacaagggatcagaggacctcca
ggaccaaaaggcatgccaggtcctatggctaatccgggccccccaggtccccttggctct
gatgggaggcaaggtgccagaggaagaaagggtgagcctggtgaccctggagagaagggc
gtagtgggaccagctggacagaggggcatgcctggtatggatggcagagatgcctatggt
cctgaaggaatcaaaggagcaaagggagaatctggattcattggatatcctggtgcacag
ggagaaaatggagatccaggtgtcccaggaattaaaggatccaaaggagttaggggtaga
aggggtaatgctggcacaccaggttctgctggagatccaggggaccaagggccaccagga
cctatgggtaccaaaggaccaaaaggcatctttgcaatggaaccttgtgaacttgtgagt
tttacacgagcaaactgcccttgttcatcagacacctgtccagtttatccaactgaagtg
gtgtttgcccttgatatgtccgaagatgttactccagctgcgtttgaaaggatgaagaac
atagtcttgtctttgcttgggaacattaagatcagtgaaagcaactgcccgacaggcgct
cgcgtctctgtggtttcctacaacgccaacacgcgctatctcatccgcttctcagaattc
cagaagagccacttgctgctgcaagcggtccagaggataccgctggagaggtccaccggg
agacgtaatattggtgcagccatgaggtttgtcgcaaggaacgtcttcaagcgggtccgt
cagggcgttctcaccagaaaagttgccgtatttttcgccaacggtccctcgcaggagggc
gatgtcatcaacaccgccgtgctcgagttcagtgccttggatatcacaccggtggtcatt
gccttcagtgaagtgccaaacgtcaggcgtgccttctcaattgatgataccggaagattt
cagttatttgtttgggaaagacaacagagtgaaaatttggagaccatcgtgtattgtact
ctttgctatgacaaatgcaaaccaaatgccagctgtgaagtttccattccccctcctgtt
cctgtggatgtggatatcgcttatatcatggacagctcttccagcgttggcagggaagag
tttcagaaagccaaagactttgtgcacaacatgctagatcagtttgtcatcaccccccaa
ccacgcgagtcacctggtggcacccgagtggcactggtgcaacaggctcccagaggcttc
ctacctggcagaagccaaagccccgtggccctggagtttgatctagtcacctacagcaat
aaagattcgatgaagaaacatatccaagagtctgttcgccaactggaaggaccgtcagcc
gttgcttctgcattacagtggacagttgagaacgtattttttaaggctcccatgcagaga
aagcacagggtcatattcacaatacttggaagccaaacaagcaagtgggacagagagagg
ctgagagagatttcacttggagccaagtgccgaggattcaccgtgttcactttagcgctt
ggcagtggtgtgagtgactgggagctcacagagctgtccagctcccctgtggagcagcac
tcgctctccctgggcagggtttcgacatctgagctggcctacgcgcagcgctttagccgg
gccttcctcagtctcctgcagcaggaaatgaacaattacccttctcctgaacttcaggaa
gagtgtgaaaacttagatcggggagacgcacaacagcaaacatccattattgaaagggtt
ccttttcctggctcagatgaaactgattacagtcgcgttctggaagaagtggcatcaact
gaaaatagaaccctggaggaaaccataagaactaacacccaacttgcacctgcgctgcca
aagatggagtatgattatgaagagaatgagaatttcacagaagaaagtggtgaagaagca
ccacaagaatatggagaagctcaggaggagaatgaggaaaacttagaggcaacaatagaa
accaccactgcctataatgttcctgatacatgtgacctgcctcaggacagcggagaatgt
caggactacgttctgaagtggtcctacaacaagtggcagaacacgtgtgatccgttctgg
tatgggggctgcggaggaaacaaaaatagatttgaaacagaagatgaatgcaaagtgttg
tgtataggatctttttag
DBGET
integrated database retrieval system
