Nothoprocta perdicaria (Chilean tinamou): 112954981
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Entry
112954981 CDS
T07556
Name
(RefSeq) collagen alpha-2(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112954981
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112954981
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112954981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
112954981
NCBI-ProteinID:
XP_025904049
LinkDB
All DBs
Position
Unknown
AA seq
1741 aa
AA seq
DB search
PPVDVLEALGLPALPAGVSSALGMCSEPGGAFRLARPAQLSAPTRQLFPGKFPEDFSIMA
LVKAKAGLQAFLLSIYDRHGTQQLGVELGRSPVFLYADQHGRPAPEDYPLFRGVDLADGK
WHRVALSVTKQSVTLLVDCKQVATRPLRRSSRPVVDTRGVTLLGARLLDEQPFQGDIQQL
LIAADPHAAREYCELYAPRCGGAHGRPQAQEPPRPQYSEEDAEYYEYPYYYTNSEAGPVL
GGHAEQDGGPPGTEEPWAGGKYPDYSPAPAPWREPAPEATGSPGPQQQQEEEEEEEGAAN
AVPGGGPEYEYVYTDYGEGAEPPELGPALSAETRPSAGAARGARGYKGEKGEPAVVEPGM
LVEGPPGPEGPAGMSGPPGTQGPPGAPGEPGERGPPGRAGLPGSDGTPGPPGTSMMLPFR
FGSSGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPMGQPGSTGMKGESGD
FGPQGPRGPQGLTGPPGKPGRRGRPGADGARGMPGDPGIKGDRGFDGLPGLPGDKGHRGD
TGSQGLPGPPGEDGERGDDGDVGPRGLPGEAGPRGLLGPKGPPGIPGPPGVRGMDGPIGP
KGNLGPQGEPGPPGQQGTPGTQGLPGPQGATGPPGEKGPQGKPGLPGMPGSDGPPGHPGK
EGPPGTKGNQGPSGPQGPIGYPGPRGVKGVDGIRGLKGHKGEKGEEGFPGFKGDMGVKGD
RGEIGVPGSRGEDGPEGPKGRTGPTGDPGPIGLVGEKGKLGVPGLPGYPGRQGPKGSQGF
PGFPGSNGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGSDGPHGPPGE
RGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGPAGE
SGPMGERGHPGPPGPPGEQGLPGPSGKEGTKGDPGPIGSPGKDGPAGLRGFPGERGLPGT
PGGPGLKGNEGPAGPPGPAGSPGERGGPGQGGPVGPPGRPGPQGPPGPAGEKGVPGEKGP
MGPAGRDGVQGPVGLPGPAGPPGGPGEDGDKGEVGEPGQKGSKGNKGEHGPPGPPGPIGP
VGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPAGEKGETGDVGP
MGPPGPPGPRGPAGPSGADGPQGPPGGIGNLGPPGEKGEPGESGTPGIQGEPGVKGPRGE
RGEKGEAGAAGVAGPPGGKGPPGDDGPKGNPGPVGFPGDPGPPGEMGPRGQDGAKGERGE
DGEPGEPGSPGPTGENGPPGPLGKRGPAGTPGPEGRQGEKGAKGEPGIVGAPGKTGPVGP
QGPAGKQGPDGLRGLPGSVGEQGKPGTTGQAGPPGPVGPPGLPGLKGDTGAKGEKGHPGL
IGLIGPPGEQGEKGDRGLPGPQGSTGQKGETGIPGATGPIGPSGPPGLPGPAGPKGAKGA
MGQAGPKGERGPPGPPGHPGPPGEVIQPLPIQLPKKSKRSIDGSKLLEEEEGEDGERAAA
DEAARDYADGMEEIFGSLNSLKQEIEGLRRPMGTQDNPARTCQDLQLSHPGLPDGEYWID
PNQGCARDSFKVYCNFTAGGETCVFPSKEMQEVKMSTWEKETPRQWFSQFREGSKFSYVD
SDSQPLGVVQLTFLRLLSVSARQNFTYHCHRSVAWHSTAAGDHQHALRFLAANEEELSYD
TSPYIKAVTDGCAARKGSSQTVLEVSTPRMEQLPLLDVRVTDFGEPNQRFGFXVGPVCFL
G
NT seq
5228 nt
NT seq
+upstream
nt +downstream
nt
ggccgcccgtggacgtgctggaggcgctggggctgccggcgctgccggccggcgtgagca
gcgccctcgggatgtgctcggagcccggcggcgccttccgcctggcgcggcccgcccagc
tcagcgcgcccacccggcagctcttcccgggtaaattccccgaggatttctccatcatgg
cgctggtgaaggccaaggccggcctccaagccttcctgctctccatctacgaccggcacg
gcacccagcagctcggcgtcgagctcggccgctcgcccgtcttcctctacgccgaccagc
acggccgcccggcgcccgaggactacccgctcttccgtggcgtcgacctcgccgacggca
agtggcaccgggtggccctgagcgtcaccaagcagtcggtgacgctgctggtggactgca
agcaggtggcgacgcggccgctgcgccgctcgagccgccccgtcgtggacacgcgcggcg
tcaccctcctgggcgcccgcctgctggacgagcagccgttccagggtgacatccagcagc
tgctcatcgccgccgacccgcacgccgcccgcgagtactgcgagctctacgcgccccggt
gcggcggcgcccacgggcgcccgcaggcgcaggagccgccgcggcctcagtactccgagg
aggacgcggagtactacgagtacccctattactacaccaatagcgaggccgggccggtgc
tggggggccacgcagagcaggacggggggccccccggcacggaggagccctgggcgggcg
gcaagtacccggattacagcccggcgccggcgccctggcgcgagccggcgcccgaggcca
ccggctccccggggccgcagcagcagcaggaggaggaggaggaggaggaaggggccgcca
acgcggtccccgggggcggccccgagtacgagtacgtctatacggactatggcgagggcg
cggagccgccggagctgggccccgcgctctccgcggagacgcggccgagcgcaggcgccg
cgcgcggcgccaggggctacaagggcgagaagggcgagccggccgtcgtcgaaccgggca
tgttggtggaggggccccccggccccgaaggccccgcgggaatgtcgggaccgccgggga
cgcagggaccaccgggagcccccggagagcccggcgagcggggaccccccggccgcgccg
gccttcccggctccgacgggacgcccggcccgcccggcacctccatgatgctgccgttcc
gcttcgggagcagcggcggggacaagggccccgtggtggcggcgcaggaggcccaggctc
aagccatcctgcagcaagcgcggctggccctccgcggcccgccgggacccatgggctaca
ccggccggcctggccccatggggcagcctggaagcaccggcatgaagggagaatccggcg
actttggtccccagggtccccgaggcccccagggcctgaccggaccgccaggaaagcccg
gccggaggggtcggccgggcgctgacggcgcccgcggcatgcccggggatcccggcatta
agggtgaccgcggcttcgacgggctgccggggctcccgggagacaaagggcaccgggggg
acaccggctcgcagggcctgcccggcccccccggcgaggacggcgagaggggcgacgacg
gcgacgtgggaccccgaggactgcccggagaagcgggcccccgaggcttgctgggcccca
aaggccccccgggcatccccggccctccgggcgttcgcggcatggacggtcccatcgggc
ccaagggcaacctggggccccaaggagagccgggcccccccgggcagcaggggacgccgg
gcacccaggggctgccgggcccgcagggcgctacgggacctcccggtgagaagggccccc
aagggaagcccggcctgccgggcatgcccggctccgacgggccgccgggtcaccccggga
aggagggaccccccggcaccaaaggcaaccagggcccgtcgggtccccaaggccccatcg
gctacccgggcccccgcggagtcaagggcgtggacggcattcgggggctcaaaggccaca
agggggagaagggcgaagaaggtttccccggcttcaagggggacatgggcgtcaaaggag
accggggcgagatcggcgtgccgggctcccgcggagaggacgggcccgagggtcccaaag
ggcggacgggccccaccggagacccgggtcccatcgggctggtcggggagaaggggaaac
tgggagtcccgggcctgcccggataccccggacgccagggccccaagggctcgcagggct
tccccggattcccgggcagcaacggcgagaagggcgctcggggtctgtcgggcaagtcgg
ggcccagaggcgagcgtggtcccacgggtcccaggggccagcgcgggccacgaggagcca
ccggaaagtcaggygccaagggcacgtctggcagcgacggcccccacggcccgccaggcg
agcgggggctgccaggaccgcaggggcccaacggcttcccgggccccaaagggccccctg
gtccccccggcaaggacgggctccccgggcaccccgggcagcgaggagaagtcggtttcc
aaggcaagaccggccccccgggtccgccaggggtggtgggacctcagggacctgctggtg
aatccggccccatgggggagagaggccacccgggcccccctggccccccaggagaacagg
ggctgccaggaccgtccggcaaggagggcaccaagggagaccccgggcccatcggctccc
ccgggaaggacggtcccgccggcctgcggggattccccggcgagcggggcctgcccggca
ccccgggcggcccagggctgaagggcaacgaaggaccggccggccccccgggacccgcag
gctcccctggagagagaggtggccccgggcaaggtggccctgtggggccccccgggcgac
cgggcccgcaagggccgccgggccctgccggagagaaaggagttccwggcgagaaaggcc
ccatgggccctgctggccgcgacggcgtccagggccccgtggggctccccggccccgccg
gcccccccggcggccctggggaggacggtgacaagggcgaggtgggcgagccgggccaga
agggcagcaagggcaacaagggcgagcacggtcctcccggtcctccagggcccatcgggc
cagtggggcagcccggagcggccggcgccgacggggagccgggtgcccgcggtccccagg
ggcactttggagccaagggcgacgaggggacgcggggcttcaacgggccccccggcccca
tcgggctgcagggattaccaggaccggctggtgagaagggtgagacgggtgacgtgggtc
ccatgggcccccctggacctcccggcccgcgtggcccagctggaccctccggagcagacg
gaccccaaggacctcctggaggtattggcaatctggggcctcctggcgagaagggggagc
ctggtgaatcggggaccccgggtatccagggggagccaggagtcaagggcccgcgaggag
agcgaggggagaagggagaagctggagccgccggagtggccggaccacctggagggaagg
gaccacctggcgacgacgggcccaagggcaaccccggtcccgttggttttccaggcgatc
caggacccccaggtgaaatgggtcccaggggtcaagacggcgccaagggtgagcgcgggg
aggacggcgagcccggtgagccgggctctccaggtccgacgggtgagaacggtcctcctg
ggcccctggggaagaggggccctgctggcacccccggccctgaggggcgtcagggcgaga
agggcgccaagggagaaccaggcatagtgggtgctcccggcaagaccggccccgtggggc
cccagggacccgctgggaagcagggtcccgatggcctccgaggtctgcccggctccgtgg
gagaacaaggcaaaccaggcaccacgggccaggctgggccgccaggaccagtgggtcccc
ccggtctccccggcctcaaaggtgacactggggccaaaggagagaagggtcaccctggtc
tcatcggtttgatcggaccgccaggagagcagggggagaagggagaccggggtctgcccg
gcccccagggctccacggggcagaaaggagaaacgggaatccccggagctaccggaccca
taggcccttctggccctcccggacttccaggccccgccggtcccaagggtgccaagggag
ccatgggccaagcgggacccaaaggtgaacgtggccctccgggaccccccggacacccgg
gccccccaggagaggtgatccagcccctgcccatccagctgcccaagaagagcaaacgct
ccatcgacggcagcaaactcttggaggaggaggagggcgaagacggagagcgggcggccg
ccgatgaggcggctcgcgactacgcggacggcatggaggagatcttcggctccctcaact
ccctcaagcaggagattgaggggctgcggcgccccatgggcacccaggacaatcctgccc
gcacctgccaggacctgcagctcagccacccaggccttccagacggagagtactggatcg
accccaaccagggctgcgcccgagactccttcaaggtttactgcaacttcaccgcgggcg
gggagacctgcgtctttcccagcaaagagatgcaggaggtgaagatgtccacatgggaga
aggagacaccccggcagtggttcagtcagttccgggagggaagcaagttctcctacgtgg
actcggacagccaaccccttggcgtggtgcagctgaccttcctacggctcctcagcgtct
ctgcgcgccagaactttacgtaccactgccaccgctcggtggcctggcacagcaccgctg
ccggggaccaccagcacgccctccgcttcctggctgccaacgaggaggagctcagctatg
acaccagcccctacatcaaagctgtgacggacggctgcgcggcacggaagggctccagcc
agacggtgctagaggtgagcacgccccgcatggagcagctcccgctgctggacgtgcgcg
tcacggactttggcgagcccaaccagagattcgggttcraggtgggaccagtctgtttcc
tcggctag
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