Nothoprocta perdicaria (Chilean tinamou): 112956836
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Entry
112956836 CDS
T07556
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112956836 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npd03019
]
112956836 (PATL1)
Messenger RNA biogenesis [BR:
npd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112956836 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
112956836 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
112956836
NCBI-ProteinID:
XP_025906089
Ensembl:
ENSNPEG00000005322
LinkDB
All DBs
Position
Unknown
AA seq
756 aa
AA seq
DB search
MEGAGSRTGSGNRSLEDCRLDEDEDAFQALGEEDEDIDQFNDDTFGSGAVDDDWQEAHER
LAELEDKAAAGAERDGDGGDPLGEHEDTLAERLTRLVIESELEDPAVMRAVQTRTPAQPP
AGLHSGLWDGSAVLRRMRAPLLAQEMPPVSVLDYALPPRAPQNREEERDPSERALPRRSS
SPVIGSPPVRAVPIGTPPKQAAVPGFNQQILCPKPVHIRASMQQRYPAAYGERMSPNQLC
SVPNSSLLGHPFPHSVSPVLSHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKL
LQGRVGQMMSPASGFRAFFGAPAASQPPPGPGCHLQSLRPPAQMFRPDTTHLHPQHRRLL
HQRQQQNRSQQRGLNGAAGDRGGHRSGPQEQPRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALVGERKQKICDMYDNLRGKAPGQERPSDDHFVQIMCIRKGKRLVGRIVPLL
SPEQAADVLLATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLATLTSLAQQLTNLPQ
SGSANPHLAAVLQNKFGLSLLYLVLSRGEELQSADGAAELLRDNAWTELVLLATRELLRA
PPAAVAKPLAAPANLLALLSRYVDPQKLNALQTKLQ
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccgggagcaggacgggcagcgggaacaggtccctggaggactgccgcctg
gacgaggacgaagacgccttccaggcgctgggcgaggaggacgaggacatcgaccagttc
aacgatgacacgttcggctccggcgccgtcgacgacgactggcaggaggcgcacgagcgg
ctggccgagctggaggacaaggcggccgcgggcgcggagcgggacggcgacggcggcgac
ccgctgggcgagcacgaggacacgctggcggagcggctcacgcggctcgtgatcgagagc
gagctggaggacccggccgtcatgcgggccgtgcagaccaggacgcccgcgcagccgccg
gcagggctccactccggcctctgggacggctcggccgtgctgcggcgcatgcgggcgccg
ctcctcgcgcaggagatgcccccggtgtccgtgctggactacgctctgcctccgagagcg
ccgcagaaccgcgaggaggagcgggacccgtcggagcgggcgctgccgcggcgctcctcg
tccccggtcatcgggagcccgccggtgcgcgccgtgcccatcggcacccctcccaagcag
gccgccgtgcccggcttcaaccagcagatcctctgcccgaagcctgtccacatccgggcc
agcatgcagcagcgctaccccgctgcctacggcgagaggatgtcccccaaccagctctgc
agcgtcccgaattcctccctcctgggccacccgttcccccacagcgtctctcccgtcctc
agccacctgcagagagcgcagctgctcggaggcgcccaggccggccgaatgtctcccagc
cagtttgcccgcgtctcgggcctcgtggggagcccccttccctccgtgaaccccaagctg
ctgcagggcagggttgggcagatgatgtccccggccagcgggttccgtgccttcttcggg
gctcccgccgcctcgcagcccccgccgggccccgggtgccacctgcagagcctcaggccg
ccggcgcagatgttccggccggacaccacgcacctgcacccgcagcaccggcgcctgctg
caccagcggcagcagcagaaccgcagccagcagcgcggcctcaacggcgccgcgggcgac
cgagggggccaccggagcggcccccaggagcagccgcgcaaagacccctacgccaacctc
atgctgcagcgggagaaggactgggtctccaagatccagatgatgcagctgcagagcact
gacccctacctggatgactattactaccagaattacttccagaagctggagaagctgtca
gcggccgaggaagtgcagggcgatggtcccaaaaaggaacgcactaagctcatcacgccy
caggtggcgaagctggagcacacctacaagccagtgcagttcgagggctcgctggggaag
ctgaccgtctccagcgtcaataacccccgcaagatgatcgacgccgtcgtcacctcccgc
agcgaggacgatgagaccaaggagaagcaggttcgagacaagcggcgccagacgctggtc
accattgagaagacctacagcctcctcctggacgtggaggactacgagaggcgctacctg
ctgagcctggagggcgagcggccggcgctggtgggcgagaggaagcagaagatctgcgac
atgtacgacaatctgagggggaaggcgcccgggcaggagaggccsagcgacgaccatttc
gtacagatcatgtgcatccgcaaggggaagcgcctcgtgggccgcatygtccccttgctg
tcgccggagcaagcggccgacgtgctcctggccacggcccgcaacctgcccttcctcatc
aagaaggacgctcaggacgaggtgctgccctgcctgctgcggcccttctcgcacgtgctc
taccacctcccgctggcgacgctcaccagcctcgcgcagcagctcaccaacctacctcag
agcggcagcgccaacccgcacctcgctgccgtgctccaaaacaagttcggcctgtccctg
ctgtacctggtgctgagccgcggcgaggagctgcagagcgcggacggcgccgcggagctg
ctgcgggacaacgcgtggacggagctcgtgctgctggcgacgcgggagctgctgcgcgcg
ccgcccgccgccgtggccaagccgctcgccgcccccgccaacctgctcgccctcctctcc
cgctacgtggacccgcagaagctcaacgcactgcagacgaaattgcagtaa
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