Nothoprocta perdicaria (Chilean tinamou): 112956989
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Entry
112956989 CDS
T07556
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03013
Nucleocytoplasmic transport
npd03015
mRNA surveillance pathway
npd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112956989 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
112956989 (DDX39B)
03015 mRNA surveillance pathway
112956989 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npd03019
]
112956989 (DDX39B)
03041 Spliceosome [BR:
npd03041
]
112956989 (DDX39B)
Enzymes [BR:
npd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112956989 (DDX39B)
Messenger RNA biogenesis [BR:
npd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112956989 (DDX39B)
Spliceosome [BR:
npd03041
]
Complex C
Other components
EJC/TREX
112956989 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112956989 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
112956989
NCBI-ProteinID:
XP_025906264
LinkDB
All DBs
Position
Unknown
AA seq
566 aa
AA seq
DB search
MAENDVDNELLDYEDDEVEAAGGGDGGDGGGGAKKDVKGSYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEGTGVPSVPQCPPVSPGVPSCPWCPVMFHVVALMFSMVSIVLAPSSTAA
SSSPLRCPPMSLVSPRVPGVPSCPLVVAPHVLHGVHRVGAIVDCGFEHPSEVSPGVPCVP
GVPSCPLVVALVFSMVSIMLAPSSTAASSSPLRVPQCPPMSPSVPIGQGGLQVDQEHIDM
VGIHRDVLVLGALQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGG
LSIKKDEELLKKSCPHVVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV
QEIFRMTPHEKQVMMFSATLSRDIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD
NEKNRKLFDLLDVLEFNQRLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPED
SDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSETG
GTGDTGGTGDTGDTGDAARRDRHLLL
NT seq
1700 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggacaacgagctgctggactacgaggacgacgaggtggaggcg
gcgggcggcggcgacggcggcgacggcggcggcggcgccaagaaggacgtcaagggctcc
tacgtgtccatccacagctccggcttccgcgacttcctgctcaagcccgagctgctgcgc
gccatcgtcgactgcggcttcgagcacccctccgagggtacgggggtccccagtgtcccc
cagtgtcccccagtgtcccctggtgtcccctcgtgtccctggtgtcccgtcatgttccat
gtggtggccctcatgttctccatggtgtccatcgtgttggcgccatcgtcgactgcggct
tcgagctcccctctgaggtgtcccccaatgtccctggtgtcccctcgtgtccctggtgtc
ccgtcatgtccccttgtggtggcccctcatgttctccatggtgtccatcgtgttggcgcc
atcgtcgactgcggcttcgagcacccctccgaggtgtcccctggtgtcccctgtgtccct
ggtgtcccgtcgtgtccccttgtggtggccctcgtgttctccatggtgtccatcatgttg
gcgccatcgtcgactgcggcttcgagctcccctctgagggtacctcagtgtcccccaatg
tcccccagtgtccccattggacaagggggtctccaggtggaccaggaacacatagatatg
gtgggcatccatagagacgtgttggtgctgggcgccctgcagcagctggagcccgtcacc
ggccaggtgtcggtgctcgtcatgtgccacacgcgggagctggccttccagatcagcaag
gagtacgagcgcttctccaagtacatgcccagcgtcaaggtggccgtgttctttggcggg
ctctccatcaagaaggacgaggagctgctcaagaagagctgtccccacgtggtggtgggg
acgcccgggcgcatcctggcgctcgcccgcaacaagagcctcaacctcaagcacatcaag
cacttcatcctggacgagtgtgacaagatgctggagcagctcgacatgcggcgcgacgtg
caggagatcttccgcatgacgccgcacgagaagcaggtcatgatgttcagcgccacgctg
agccgcgacatccgccccgtgtgccgcaagttcatgcaggatcccatggagatctttgtg
gacgacgagaccaagctgaccctgcacggtctgcagcagtactacgtgaagctcaaggac
aacgagaagaaccgcaagctcttcgacctgctcgacgtgctcgagttcaaccagaggctc
tcgcggtaccagcagttcaaggacttccagcgccgcatcctggtggccaccaacctgttt
gggcgcgggatggacatcgagagggtcaacatcgccttcaactacgacatgcccgaggac
tcggacacctacctgcaccgggtggcgcgcgccgggcgcttcggcaccaagggcctcgcc
atcacgttcgtgtcggacgagaacgacgccaagatcctcaacgacgtccaggaccggttc
gaggtgaacatcagcgagctgcccgacgagatcgacatctcctcctacagtgagactggg
ggcactggggatactggggggactggggatactggggacactggggacgctgcccgacga
gatcgacatctcctcctaca
DBGET
integrated database retrieval system
