Nothoprocta perdicaria (Chilean tinamou): 112958419
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Entry
112958419 CDS
T07556
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npd03016
]
112958419 (RTCB)
Enzymes [BR:
npd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
112958419 (RTCB)
Transfer RNA biogenesis [BR:
npd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
112958419 (RTCB)
Prokaryotic type
tRNA splicing ligases
112958419 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
112958419
NCBI-ProteinID:
XP_025908035
Ensembl:
ENSNPEG00000015920
UniProt:
A0A8C7A3K9
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgacgagctccagtacctggacaagctggacaagaactgctgg
cgcatcaagaagggcttcgtgcccaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcgtgccgcggcggaggtgcggga
gggtttctgccggccatgaagcagatcgggaacgtggccgccttgcctggcatcgtgcac
agatccataggcctcccagatgtgcattcaggctatggatttgccattggcaacatggca
gccttcgatatgaatgatcccgaggcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttactacgtacaaatttggacgaaagtgatgtacagcctgtgaag
gagcagcttgcccaggctatgtttgaccacatccctgtcggtgtgggctccaagggtgtg
atccctatgaatgccaaggatttggaagaggctctagaaatgggggttgactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggctgatcccaacaaggtttcctcgagagcaaagaagaggggcctgcctcagctgggg
accctgggagcagggaaccattacgccgagatccaggttgtggatgacatttacaacgaa
taygcagccaggaagatgggcattgaccacaaggggcaggtgtgcgtgatgatccacagc
ggcagcaggggcttgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtaaacgatcgccagctggcgtgtgccaggattgcctct
gcagaagggcaggattacctgaagggaatggcagctgctgggaactatgcttgggtcaat
cgctcctctatgactttcttaacaagacaggcgtttgccaaagtgttcaacactacccca
gatgacctcgatatgcacgttatctatgatgtttctcacaacattgccaaagtggagcag
cacgtagtggatggaaaagagcggacgctgctggtgcacaggaagggatccaccagggcc
ttccctcctcaccatccccttattgctgtggattatcaactgactgggcagcctgtgctg
attggcgggaccatgggcacctgtagctatgtccttactggcacggagcaaggcatgacc
gagaccttcggaacgacttgtcacggagctggtcgtgccctgtctcgagccaaatctcgt
cgtaacttggacttccaggatgtgttggacaagctggctgacatgggcattgccatccgt
gttgcatctcccaagctggttatggaagaagcaccagagtcttacaagaatgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaattgagacctatc
gctgttattaaaggctag
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integrated database retrieval system
