Nothoprocta perdicaria (Chilean tinamou): 112959479
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Entry
112959479 CDS
T07556
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112959479 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
npd03000
]
112959479 (CNOT4)
03019 Messenger RNA biogenesis [BR:
npd03019
]
112959479 (CNOT4)
04121 Ubiquitin system [BR:
npd04121
]
112959479 (CNOT4)
Enzymes [BR:
npd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112959479 (CNOT4)
Transcription factors [BR:
npd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
112959479 (CNOT4)
Messenger RNA biogenesis [BR:
npd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112959479 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112959479 (CNOT4)
Ubiquitin system [BR:
npd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112959479 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
Torus
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
112959479
NCBI-ProteinID:
XP_025909281
Ensembl:
ENSNPEG00000008280
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRYDVPIDKPSDSLSIGNGDSSQQITNSDTP
SPPPGLSKPNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SNDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIE
KELSVQDQPSLSPTSLQNPTPHTTAAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIP
ISDNTSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLSW
DSPGSWMDPAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSNPF
GTQIPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccccctttgcatggagcct
ctggagattgatgacatcaacttcttcccttgcacctgtggctaccaaatatgtcgtttc
tgttggcaccgtatccgcactgatgagaatggactttgtcctgcttgcagaaagccatac
ccagaagatccagcagtgtacaaaccactctcccaggaggagctgcaaaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaaccgcaaacacttg
gccagtgtacgggttgtacagaagaaccttgtctttgtggtagggctatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacacaaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacattcggtcagaagatgctctcagagccatacagtgcgtcaataacgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatactgcagttattttcta
aagaatatgcagtgtccaaagccagactgcatgtatctacatgagctgggagacgaagca
gccagtttcacaaaagaagaaatgcaggcgggcaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaattttctccagttatctacgggtacagttgac
aagaacaaaaacaaagtgacagcactgcagaggtatgatgtccctatcgacaaaccttcc
gattccctcagtataggaaatggtgacagctctcagcagataacaaacagtgacacacct
tcaccaccacctggtttatcaaaacccaatccagtcatacccatcagctcatctaatcac
agtgcgcggtccccgttcgaaggggctgtaacagaatcacagtcgctcttctctgacaac
ttccggcaccccaaccccatccccagtgggctccctccattccccagttctccacagact
tccaatgactggcccacagcaccagaaccacagagcctcttcacatcagaaactatacca
gtgtcctcctcaacagactggcaagcggcttttgggtttggttcctccaaacagcaagag
gacgacttagggtttgacccctttgacatcacccgcaaagccttagcagacctgattgag
aaggaactgtcagtccaagaccaaccttccctctcgcccacatctcttcagaaccccacc
ccacacactacagctgccaaagggccaggctctggattcctgcatcctgctgctcccaca
aatgccaactctctcagtagcacctttccagtcatgccacagaggttcccgcagtttcaa
cagcaccgagcagtttacaactccttcagttttccaggccaagcagctcgctatccttgg
atggccttcccacgcaatagcatcatgcacttgaaccacacagcaaatcccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacagcacaggtctgggagggatccct
atatcagacaacaccagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctaccgaacattaacatcaactttggtggactgcccaatgcttcctccccc
tccaacgccaaccacagtgtaccaacgtccaacactgccaccaccgacagcctgagttgg
gacagccctggcagctggatggaccccgcaatcatcacaggtatcccagcctccacagga
aacagtttagacacccttcaagatgacaatcctccacattggctaaaatctcttcaggcc
ctcacagagatggacggccccagcgcagcgccgtcacagacacaccacagtaaccccttc
ggcacacagatcccgctgcacagagccagttggaatccctactctcctccgtcaaacccc
accagcttccactcccccccaccaggctttcagacagccttcagaccccccagcaaaacc
cccacagatctactacagagctcagcgctggatcgtcactag
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