Nothoprocta perdicaria (Chilean tinamou): 112960274
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Entry
112960274 CDS
T07556
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112960274 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npd03041
]
112960274 (DDX42)
Enzymes [BR:
npd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112960274 (DDX42)
Spliceosome [BR:
npd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112960274 (DDX42)
Complex B
112960274 (DDX42)
Complex C
U2 SnRNP specific factors
112960274 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
112960274
NCBI-ProteinID:
XP_025910280
Ensembl:
ENSNPEG00000012588
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFSKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEENSNVDLPYIPAENSPTRHQLHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKSAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESSDRGNNSSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQSAANAEGSIAAAAKGVPGFTSSGNLSSVPTFP
SVGIQGFNSANASSNSREGINGGGGGGGRERCNDNRNNRHNDVQRRAEEGPGRYNDAQRQ
GEGGGRHADGYRHGDSRHGDSHRHSENRHLPDPSGGNRNNGESRNSNEERNNENRNGENR
KEGSSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggcggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctggaaagaaggaggaaccgaagctctctcagcagtctcacagtgcttttgga
acagctggttcttctgctgcattctcaaaatccggacctccacagctgccttctttttat
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcatactttgaggatgaagag
gaagagaacagcaatgttgacctgccgtatattcctgcagaaaattcccccactcgccat
cagcttcattccaaatccgcagactctgacagygatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaggag
aaaaagagtgcaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggccgaaaatcccaccgctggtgtggtacaagaagaggaggaggataac
cttgagtatgacagtgatgggaatccaattgcaccatccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccgtttgagaaaaatttctatgatgag
catgaagaaatcaccagtctcaccccacagcaagtggtagagttgcgtcataaactaaat
ctgcgggtctctggtgctgctcctccacggcctggtagcagttttgctcattttggtttt
gatgagcaacttatgcatcaaattaggaaatctgagtatacccagcccactcctatacaa
tgtcagggtgttccagttgcactgagcggcagagatatgattggaatagctaagactgga
agtggaaaaacagcagccttcatttggccgatgctgattcacatcatggatcaaaaggag
cttgaaccgggagatggtccgattgctgtgatcgtatgtccgaccagagagctttgccaa
cagatacattctgaatgtaaacgttttgggaaagcgtataatctacgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggcagaaatagtt
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacgaaccttcagaga
gtcacttaccttgtatttgatgaagcagacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgcaagccacgtacgtccagacagacagaccctcttgttcagtgccact
tttcgtaagaagattgagaaattggcccgtgatattctcattgatccaattcgagtcgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccctct
ggccctagcaaatggaactggctgactcggcgccttgtggagttcacgtcttctgggagt
gttctcctctttgtcaccaagaaggcaaatgcagaagagctggccaataacctcaagcag
gaggatcataatctggggctgcttcatggtgacatggatcagagtgagaggaataaagtc
atctcagaatttaagaagaaggggatcccaatactggtagcaactgatgtggcagctcgt
ggattggacattccttccattaagaccgtgatcaactacgatgtggcccgggacatagac
acgcacactcacaggatcggtcgcactggcagagcaggcgagaagggagtagcctacaca
ctgttgactccaaaagacagtaactttgctggtgatcttgtcagaaatttggaaggagct
aatcaacacgtttccaaagagctgttggatcttgcaatgcagaacccatggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagctgaatattgggggaggtggcttaggatac
cgtgaacgtcctggtctgggatcagaaagttctgaccgtggaaacaacagcagtgtgatg
agtaactatgaggcctacaagccatcctcaggggcgatgggagacagacttacagcaatg
aaagcagcttttcagtcccaatataagagccacttcgttgctgcaagccttaacaaccaa
aagacgggtagctcggccgctggcgctagcggctggaccagcgccgggagcttgaattcg
gtcccgacgagttcagcgcagcaaagtgctgccaacgccgagggctccatcgcagctgca
gccaaaggtgtgccaggcttcaccagctctgggaatctgagcagygttcccaccttccca
agcgttggaatacagggcttcaacagcgcaaatgccagcagcaacagtcgggaaggcatc
aatggtggcggtggtggtggtggcagggaacgatgcaatgacaaccggaataatcgccac
aacgatgttcagcgccgtgcggaggaaggtcctgggcgctacaacgatgctcagcgccag
ggagaggggggcggtcgccatgcagatggctaccgccacggtgacagccggcacggggac
agccatcgccacagtgaaaaccggcaccttccggatccaagtggtggcaatcgcaataac
ggtgagagcaggaatagcaatgaagagaggaacaacgagaacaggaacggggagaacagg
aaggaaggcagcagccgagacaacaagacagatggttttgctgtccccgagcccccaaag
cgcaagaagagccgatgggacagttaa
DBGET
integrated database retrieval system
