Natrinema pellirubrum: Natpe_0130
Help
Entry
Natpe_0130 CDS
T02425
Name
(GenBank) PAS domain S-box
KO
K06930
HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
Organism
npe
Natrinema pellirubrum
Brite
KEGG Orthology (KO) [BR:
npe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
npe03000
]
Natpe_0130
Transcription factors [BR:
npe03000
]
Prokaryotic type
Helix-turn-helix
Other families
Natpe_0130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_9
PAS_4
PAS
BAT
GAF_2
HTH_10
PAS_8
GAF
GAF_3
PAS_11
Diguanyl_cycl_sensor
Sigma70_r4
Sigma70_ECF
HTH_5
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AGB30072
UniProt:
L0JHL3
LinkDB
All DBs
Position
120657..125153
Genome browser
AA seq
1498 aa
AA seq
DB search
MIAAVAPLEALAGRRGRLTVVGTIGVLVALVLGTTPAVSLPSEQIPGLVVFGLAARRDAD
RPTDIERLTDELRGFVSQLEDADPTADDGSLPAEPDLAEYERDRDDEIGRLSAAVDDLAT
AVRDRERQRAESERYRRELARITSDSGLGTETKIRRLLELGCERLGLETGLVSHVDEPAD
RYEIEAAVGAEADLEGAVLDLSETHCRNTVTSDDVVGISETPAADVDVGAAVESAVGCYI
GGKIRVDGDLYGTVCFVSDDPRDRPFSPAERSFVDLLARWVSGAFERREYVAAIEERERR
LERTQAFTDDMLDAVDDVVYLLEEDGDLRRWNETLVDVTGYSDAEVAEMNAVDFFDAENE
GAIRESMEEAFETGETLVEAELRTKSGERIPYEFIASVLEDPNGNPVEVGIGRDISDRKE
RERRLERTTSLLEQSQRLADVGAWELDVSTEPYDLQWTAEIRRILGVSPDEPIDLERAFE
FYHPEDRPRIREAVERAITDGEPYDIELRMWTADGDRRWVRTIGEPVREDGEIVTLRGSF
QDVTERKERERDLERAETVLQALDELVYTIDADGEFTYLNDALEGITGYEPDDLIGDHVS
TMMDDDDIETARDRIRDLRSAGEPTRTFEMDLETADGDVIDVENHMALLPSDDGEFAGTA
GVLRDITDRKERERDLERFEAIVQALDELVYTLDEEGRFTYLNDAAKPILGYEPEELIGK
PAATVIPSADVERAQDRIRELLRSDVPSQTVEIVLETADDEVIDVENHIALLPSDDDEFV
GSAGVVRDITARKERERDLERTTELLKQAERLAGIGGWELDLSGETRNVTFTDGLHRLYD
LPLDATVDSELATSFPHPEDRERVLEIVDRTIEAGEGYDIEHRMRTMTGDERWVRSTGEP
IRADGADDAGIVGVRGTIQDITDRKERELTLESLHDAARDLLGTDTEAEVSALVVETAAD
ILEASGAAVYRLDPAVNRLVPAASTEAFDRLCNDAPSVAIGDGESALWSTYVTGTGTVID
DPSSVDRSQVFGPAVESGVIVPIGDYGVFTVATDAEPIDAEARRLIETLVATTEAAFDRL
ESEASLREREAQLEARNQRLNRQIETTELIRRIDQVLIGAESRGEIERTVPERLLEADSV
AFAWIGDRDPSGTRLEPRAWAGDGQAYLDDVSLADDAAEPAVRTAIDGTPTVVSNVVEGL
QGDPWRRRAVDRGFQSVISVPLSHAEYSYGVLTIYADEPDAFGDLERTVLTELGEGIANS
ITAMKTREALHAERLLELTLRIDGDEDPLSRLAAKIGADVEYAGMGSHSSDETLLFVETD
GIAPDDVRSALAELVSVTDSRLISETDGTCRFEATVSGDPLAARLVRHGGSPRSIRADGE
GLEVVVDVPTGTDVREFVETLGEGHGGVELRARRHVERSMGTRSELVTSLFDALTDRQLE
VLRTAYFAGFFEWPRESTGEEIAEMLAVTQPTVNRHLRLAQGRLLAQLFEDQIPLDSN
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgatcgctgccgtggctcctctcgaggcgctcgcgggacggcggggacggctcacggtc
gttgggacgatcggcgttctcgtcgcgctcgtcctcgggacgacgcccgccgtctcgctc
ccgtccgagcagattcccggactcgtcgtcttcgggctcgccgcccgtcgggacgccgac
cgtccgaccgatatcgaacgactcacggacgaactccgggggttcgtctcgcagctcgag
gacgccgatccgaccgccgacgacggctctctcccggccgagccggatctggccgagtac
gagcgcgaccgagacgacgagatcggccggctctccgcggccgtcgacgacctggcgacg
gcggtccgggaccgcgaacggcaacgggccgagagcgagcgctaccggcgggaactcgcc
cggatcacgtccgattcggggctggggacagagacgaagatccgccggctgctcgagttg
ggctgtgagcggctcggtctcgagacgggactcgtctcgcacgtcgacgaaccggccgac
cggtacgagatcgaggcggccgtcggagccgaggccgacctcgagggagcggtactggac
ctttcggagacccattgccggaacaccgtgacgtcggacgacgtggtcgggatctcggag
acgccggcggccgacgtcgacgtgggtgcggccgtcgaatccgccgtcggctgttacatc
ggcgggaagatacgcgtcgatggggacctctacggcacggtctgtttcgtgagcgacgat
ccgcgggaccggccgttctcgccggcagaacggtcgttcgtcgatctgctcgcccggtgg
gtcagcggggcgttcgaacgccgcgagtacgtcgcggccatcgaagaacgggagcgccgc
ctcgagcggacacaggcgtttaccgacgacatgttagacgccgtcgacgacgttgtctac
ctgctcgaggaagacggcgacctcaggcggtggaacgagacgctggtcgacgtgacgggg
tattcggacgcggaggtcgcggagatgaacgccgtcgacttcttcgacgccgagaacgag
ggggcgattcgggagtcgatggaggaggcgttcgagaccggcgagaccctcgtcgaggcc
gaactccggacgaaatcgggcgagcggatcccctacgagttcatcgcgtcggtactcgag
gatccgaacgggaacccggtcgaggtcggaatcggccgcgacatcagcgaccgcaaggaa
cgcgagcgccgcctcgaacggacgacgtccctgctcgagcagtcccagcggctggccgac
gtcggcgcgtgggaactggatgtctccacggagccgtacgacctccagtggaccgccgag
atccgccgcattctcggcgtttcaccggacgaaccgatcgacctcgagcgtgcgttcgag
ttctaccaccccgaggaccgtccccgcattcgcgaggcggtcgagcgtgcgatcaccgac
ggggagccctacgacatagagcttcgcatgtggacggccgacggcgaccggcggtgggtg
cggacgatcggcgaaccggtccgcgaggacggcgagatcgtcacgctccgtggctcgttc
caggacgttacggagcggaaagagcgcgaacgcgatctcgagcgcgccgagacggtcctc
caggcgctggacgaactcgtctacacgatcgacgcggacggggagtttacctacctgaac
gacgccctcgagggaatcaccggctacgagcccgacgacctgatcggcgaccacgtctcg
acgatgatggacgacgacgacatcgagacggcccgggaccggatccgtgacctccgcagt
gccggcgagcccactcgaaccttcgagatggacctcgagaccgccgatggcgacgtgatc
gacgtcgaaaatcacatggcgctgttgcccagcgacgacggcgagttcgccgggaccgcg
ggggtccttcgcgatatcaccgatcgcaaggaacgggaacgcgacctcgagcggttcgag
gcgatcgtgcaggcgctggacgaactggtctacacgctcgacgaagagggacgattcacc
tatttgaacgacgctgccaagccgatcctcggctacgagcccgaggaactgatcggcaaa
cccgcggcgacagtgatcccgtcggcggacgtcgagcgggcacaggaccggatccgcgaa
ctcctccggtcggacgttccctcccagacggtcgagatcgtcctcgagaccgccgacgac
gaggtgatcgacgtcgaaaatcacatcgcgttgttgccaagcgacgacgacgagttcgtg
gggtccgcgggggtcgtccgcgacatcacggcgcgcaaggagcgcgaacgcgacttggag
cggacgaccgaactcctcaaacaggccgagcgcctcgccggcatcggcggctgggaactc
gacctcagcggcgagacgcggaacgtgacctttaccgacgggttacatcgcctctacgac
ctcccgctggacgcgacggtcgactcggaactggcgacctcgttcccccatcccgaggac
cgagaacgcgtcctcgagatcgtcgatcgcacgatcgaagcgggcgagggatacgacatc
gaacaccgaatgcggaccatgacgggggacgaacggtgggtccgttcgaccggcgagccg
atccgtgcggacggtgccgatgacgccggcatcgtcggcgtccgcgggacgattcaggac
atcaccgaccgcaaggagcgcgaactgaccctcgagtcgctacacgacgcggccagggac
ttactcggcaccgacaccgaagcggaggtatcggcgctggtcgtcgagaccgccgcggac
atcctcgaggcgtcgggcgcggccgtgtaccggctcgatccggcggtcaatcgactcgtc
cctgccgcctcgaccgaggccttcgatcgcctctgtaacgacgcgccgtcggtcgccatc
ggcgacggcgagtccgccctctggagtacctacgtgaccgggacggggaccgtcatcgac
gatccgtcgtcggtcgatcggtcgcaggtcttcggtccggccgtcgagagcggggtcatc
gtcccgatcggcgactacggcgtcttcacggtcgcgaccgacgcggagccgatcgacgcc
gaggccaggcggctgatcgagacgctcgtcgcgacgaccgaggccgcgttcgaccgcctc
gagagcgaggccagcctccgcgagcgggaggcacaactcgaggcccgaaaccagcggctc
aacagacagatcgagacgacggaactgatcaggcggatcgatcaggtcctcatcggggcc
gagagccgcggggagatcgagcggaccgttcccgagcgactactggaggccgactcggtc
gcgttcgcctggatcggcgaccgcgacccgagcgggacccgtctcgagccccgtgcctgg
gccggtgacgggcaagcgtatctcgacgacgtctccctcgcggacgacgccgccgagccg
gccgtccgaaccgccatcgacgggacgccgacggtcgtctccaacgtcgtcgaggggctg
cagggcgatccctggcggcgtcgggcggtcgaccgggggttccagtcggtcatcagcgtc
ccgctgtcccacgcggagtactcctacggcgtcctgacgatctacgccgacgaacccgac
gcattcggcgacctcgagcggacggtcctgacggaactgggtgaagggatcgccaactcg
atcaccgcgatgaagacccgagaggcgctgcacgccgaacggttgctcgaactcacgctc
cggatcgacggcgacgaggaccccctctcgcggctcgcggcgaagataggggccgacgtc
gagtacgcgggcatgggttcacactcgagcgacgagacgctgctgttcgtcgagaccgac
ggcattgcgcccgatgacgttcgatcggcgctcgcggagctggtgtcggtcaccgattcc
cggctgatcagcgaaaccgacgggacgtgtcggttcgaggcgaccgtctccggcgaccca
ctggccgcccggctggtccgtcacggcggcagtccgcgctcgatacgggccgacggcgag
gggctcgaggtcgtcgtcgacgtcccgaccgggactgacgtccgcgagttcgtcgagacg
ctcggggagggacacggcggcgtcgagttgcgggcgcgtcgccacgtcgagcggtcgatg
gggacgcgcagcgaactcgtgacgtcgttgttcgacgccctgaccgaccgccagctcgag
gttctccggaccgcctacttcgccggcttcttcgagtggccccgcgagagtaccggcgag
gaaatcgccgagatgctcgcggtaacgcagccgacggtcaaccgtcacctgcggctcgca
cagggccgactgctggcacagttgttcgaggatcagatcccgctcgactcgaactga
DBGET
integrated database retrieval system
