Natrinema pellirubrum: Natpe_2183
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Entry
Natpe_2183 CDS
T02425
Name
(GenBank) PAS domain S-box
KO
K06930
HTH-type transcriptional regulator, bacterioopsin transcriptional activator and related proteins
Organism
npe
Natrinema pellirubrum
Brite
KEGG Orthology (KO) [BR:
npe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
npe03000
]
Natpe_2183
Transcription factors [BR:
npe03000
]
Prokaryotic type
Helix-turn-helix
Other families
Natpe_2183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_4
GAF_2
BAT
HalOD1
PAS
PAS_9
HTH_10
GAF
GAF_3
PAS_3
PAS_8
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
AGB32008
UniProt:
L0JME6
LinkDB
All DBs
Position
complement(2126018..2129317)
Genome browser
AA seq
1099 aa
AA seq
DB search
MTRGFTATEPTPVRALVVGSSEWARSTAGLADERLTVTGPVTGVDDLDDDRLEVVDCVLT
DDPTVVDDLAGSCPVVYALDPTGDESIDDVRRGATDVIAATTARNPALLAHRLERAVATD
ARAATADGPPVRGPEWYRTILEYSSEVVLTIEADGEISYASPAVEVAGGYDPATLCGDHY
LEHVHGDDTAAVAAEFEATRAADLGTSRTVEYTCQHADGAWYVHEAVLTNRLGDGVVDGV
VASIRDITEYHRIERELSESFKRVTDAFYALDSDWEFTYVNDRALEILSTDRSELLGRHI
LEVFPEMTGTAFQSAATEAMAEQESRTVEGYLDAYDAWIEARIYPSPSGMSVYWRDVTDR
VQRKRDLTERTERLQTLVENAPIVLFVLDEDGTFTLSEGRGLANLGTDAGEVVGDSFFDQ
LGDYPAICDDARRALEGEDVHSRRELSDRVFEMWYRPITDGGDVDRVIGVASDITERVQY
QEALSGLHEASSHLLSVDSKAAACKSIVEVATDVLDLDSVVYRFDERANELRPAAHASAF
ESTFGSPPRIEPDGSIVWETFVNGETAIDDDTRDSTAVSDEETAARSVLSVPLGEHGVVV
ALSTDPAAYDDETVELAELFARAAEAALDRIGRTRRLRDRERELEAQNRHLERLNDANEI
RQSIEELLLKADSRAEIERGVPRRLAALESCSLAWVGEPDPGGNRLQVRAHAGAERGYLE
AVTATAVDDSAAEPAGRAARTQAPVYVENVADAVHDGEWRRKALSRNFQSVYAVPLVYDG
FCYGVVSIYGEDRDAVDETLRSMLSELGETIAYAIDAVKRKNALFGDDRTEVELAVAADA
TLCQLAARLGSPMRYEGATAPDEGPQLVFAAIEGPIDDPASAVDLAAVDGISEITTIADH
EGETLVQLRMTDSFLGSIAGTHGARLREFSVDESGGRAVVDVPDAVEIRELLADITRSGP
SVSMVARREAPTDDPETVGGATRTVLLESFTDRQREVVQTAYHGGFFEWPRRATGEEIAD
SLDISSPALSVTVADAVATHKGVEVTDLEPLHYSINADALERLFEPRTDGLRSNGSVTFE
YSDCLVTVTADSEIRVTSV
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcggtttcacggcgaccgaaccgacgccggttcgcgcgctcgtcgtcggttcg
tccgagtgggcccggtcgacggcggggctcgccgacgaacggctgacggtgacggggccg
gtcacgggggtcgacgacctcgacgacgatcgactcgaggtggtcgattgcgtcctgacc
gacgacccgacggtcgtcgacgacctcgccgggtcgtgtccggtcgtctacgccctcgac
ccgacgggagacgaatcgatcgacgacgtccggcgaggggcgacggacgtgatcgccgcg
acgaccgcccggaacccggcgctgctggctcatcggctcgagcgagcggtcgccaccgac
gcgcgggcagcgacggcggacggaccgcccgttcgtgggccggagtggtaccggaccatt
ctcgagtactcctcagaggtggtactcacgatcgaggccgacggggagatatcctacgcc
agcccggcggtcgaagtcgccggtggctacgatcccgccaccctctgcggggatcactac
ctcgaacacgtccacggggacgatacggcggcagttgcggccgagttcgaggcgacccgt
gcggccgatctgggcacctcccggaccgtcgagtacacgtgccagcacgccgacggcgcg
tggtacgtccacgaggccgtcctcacaaaccggctcggggacggcgtcgtcgacggcgtc
gtcgcgtcgatccgggatatcaccgagtatcaccgcatcgagcgggaattgagcgagtcg
ttcaaacgcgtcaccgacgctttctacgccctcgattcggactgggaattcacctacgtc
aacgatcgcgccctcgagatcctctctaccgaccggtccgagctgctcggccgacacatc
ctcgaggtgttcccggaaatgaccgggacggcgtttcagtccgcggccaccgaagcgatg
gccgagcaggagtcccggaccgtcgagggctacctcgacgcctacgacgcgtggatcgag
gcgcggatctacccgtcgccgtcggggatgtcggtctactggcgggacgtcaccgaccgc
gtccagcgaaagcgggacctgaccgaacggaccgagcgattacagacgttggtcgagaac
gcaccgatcgtcctgttcgtcctcgacgaggacgggacgttcacgctctcggaggggcgc
gggctcgcgaacctcggtaccgatgccggcgaggtcgtcggcgactcctttttcgaccag
ctcggggactatccggccatctgtgacgacgcaagacgtgccctcgagggcgaggacgtc
cactcccggcgggaactctcggaccgggtcttcgagatgtggtaccgaccgatcaccgac
ggcggcgacgtcgaccgcgtgatcggcgtcgcaagcgacatcaccgaacgggtacagtac
caggaggcgctcagcggactccacgaggcgagcagccatctgttgagcgtcgactcgaag
gcagccgcctgcaagtccatcgtcgaggtcgcgaccgacgttctcgacctcgatagcgtc
gtctaccggttcgacgagcgcgcgaacgaactccggccggcggcccacgcgtcggcgttc
gagtcgaccttcgggtcgccgccacggatcgagccggacgggagcatcgtctgggagacg
ttcgtgaacggcgagacggcgatcgacgacgacactcgagattcgaccgcggtatccgac
gaggaaacggccgcacggagcgtcctctccgtcccgctgggcgaacacggcgtggtcgtc
gcgctgtcgaccgacccggccgcctacgacgacgagacggtcgaactcgcggaactgttc
gcacgggccgcggaggcggcgctcgaccggatcggccgaacgcgtcggctccgtgaccgc
gaacgcgaactcgaggcacagaatcgccacctcgagcggcttaacgacgccaacgagatc
cgccaatcgatcgaggaactcctgttgaaagcggactcccgggccgagatcgaacgcggc
gtcccccggcggctggccgccctcgagtcgtgttcgctggcctgggtcggggagcccgat
cccggcgggaaccgcctacaggttcgggcccacgcgggggccgaacgggggtatctcgag
gcagtgacggcgacggcggtcgacgactcggcggccgaacccgcgggacgggcggcgcga
acacaggccccggtctacgtcgagaacgtcgccgacgcggtccacgacggggagtggcga
cggaaggctctctcccggaacttccagtcggtgtatgcggtcccgctggtctacgacggg
ttctgctacggtgtcgtctcgatctacggcgaggatcgcgatgccgtcgacgagacgctt
cgctcgatgctgtcggaactcggcgagacgatcgcctacgcgatcgacgccgtcaaacgc
aagaacgcgctgttcggcgacgaccgcaccgaggtcgaactcgcagtcgcggccgacgcg
acgctgtgtcagttggcggcgcgtctcggatcacccatgagatacgagggggcgacggca
ccggacgaggggccacagctcgtcttcgcagcgatcgaagggccgatcgacgatcccgca
tcggccgtcgacctcgccgcggtcgacgggattagcgagatcacgacgatcgccgaccac
gagggggagacgctcgtccagctccggatgaccgattcgttcctcggctcgatcgccggt
acccacggcgcgcggctgcgcgagttctcggtcgacgagtcgggtggtcgcgccgtcgtc
gacgttcccgatgccgtcgagatccgtgaactgctggccgatatcacccgcagcggtccc
tcggtgtcgatggtcgcgcgacgtgaggccccgaccgacgaccccgagacggtcggcggg
gccacacggacggtcctcctcgagtcctttactgatcgccagcgagaggtcgtccagacg
gcctatcacggcgggttcttcgagtggccgcgtcgagcgaccggcgaggaaatcgccgac
tcgcttgatatctcttcgcccgcgctcagcgttaccgtcgcggacgccgtcgcaacgcac
aagggggtcgaggtcacggatctcgagccgcttcactactcgatcaacgccgacgcgctc
gagcgactgttcgaaccgcggacggacggtctccgatccaacgggtcggtgacgttcgag
tacagcgactgtctcgtcacggtcacggcggacagcgagatccgggttacatcggtctga
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