KEGG   Natrinema pellirubrum: Natpe_2230
Entry
Natpe_2230        CDS       T02425                                 
Name
(GenBank) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
npe  Natrinema pellirubrum
Pathway
npe03030  DNA replication
npe03410  Base excision repair
npe03420  Nucleotide excision repair
npe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:npe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Natpe_2230
   03410 Base excision repair
    Natpe_2230
   03420 Nucleotide excision repair
    Natpe_2230
   03430 Mismatch repair
    Natpe_2230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:npe03032]
    Natpe_2230
   03400 DNA repair and recombination proteins [BR:npe03400]
    Natpe_2230
Enzymes [BR:npe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Natpe_2230
    6.5.1.6  DNA ligase (ATP or NAD+)
     Natpe_2230
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Natpe_2230
DNA replication proteins [BR:npe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Natpe_2230
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Natpe_2230
DNA repair and recombination proteins [BR:npe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Natpe_2230
   NER (nucleotide excision repair)
    Other NER factors
     Natpe_2230
   MMR (mismatch excision repair)
    Other MMR factors
     Natpe_2230
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: AGB32055
UniProt: L0JKI4
LinkDB
Position
complement(2171142..2172875)
AA seq 577 aa
MEFATFADRAGTIDAEPADLEIVAHVRDLLAAADDEIEVVARFVQGRVFPAWDSTTLDIG
PSACYEAIARAAGQNVSSDDVEDRLADVGEIGDVAASYEFGGQQGLGAFTDGDGGTGDDL
TVREVADTLTELAAAEGSGSHDRKVDLLFGLFNRASSEEARYLARLVLSEMRIGVGEGTV
RDAIAAAFEVPEDRVERALQVSNDYGRVARIARDEGVVGLDTMDLAVGRPVQAMLAQAGT
VTDALEEWGTAAVEWKYDGARIQLHHDPAGMDDGDGSTVETRVFSRNMEDVTDALPEVVE
FAAETLEAPAILDGEVVAVDDDGSPLPFQEVLKRFRRKHDVAKARENVSVRPVFFDCLHA
DGEDLLADPLTTRHDRLRSVLVDSGADGDAGDAVADEDIEGLSLLWTTDDPDEIESIDAD
ALEAGHEGIMLKDPESTYSPGRRGKHWRKRKPDVETIDCVVTGAEWGEGRRATFLGTFEL
AVRAGDEFETVGKVATGITDEKLEELTDLLEPHIVAEAGQEVDLEPAVVFEVGYEEIQSS
PTYSSGYALRFPRFLGVRYDKDPEGADSLERLQRLQA
NT seq 1734 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgaccgcgccgggacgatcgacgccgaacccgccgacctc
gagatcgtcgcccacgtcagggacctgctcgcggcggccgacgacgagatcgaggtcgtc
gcgcggttcgtccaggggcgggtgttccccgcctgggactcgacgacgctcgacatcggc
ccgagcgcgtgttacgaggcgatcgcccgcgcggcggggcaaaacgtcagtagcgacgac
gtcgaggaccgactcgccgacgtgggcgagatcggcgacgtggcggccagctacgagttc
ggcggccagcagggcctcggcgcgttcacggatggcgacggcggaaccggtgacgatctc
accgtccgcgaggtcgccgacactctcactgaactggccgccgccgagggatcgggcagc
cacgaccggaaggtcgacctcctctttggcctgttcaaccgcgcctcgagcgaggaggcg
cgctatctcgcccgactcgtcctctcggagatgcgcatcggcgtcggcgaggggacggtc
cgagatgccatcgccgcggccttcgaggtccccgaggaccgcgtcgaacgcgccctacag
gtgtcgaacgactacggacgggtcgcccgaatcgcacgagacgagggcgttgtggggctc
gacaccatggacctcgcggtcggccgccccgtccaggcgatgctcgcacaagccgggacc
gtgaccgacgcgctcgaggagtgggggacggccgcggtcgagtggaagtacgacggggcg
cggattcagttgcaccacgaccccgcgggcatggacgacggcgacggctcgacggtcgag
acccgcgtcttctcgcggaacatggaggacgtcaccgacgcccttcccgaggtcgtcgag
ttcgccgcggaaaccctcgaggcccccgccatcctcgacggcgaggtcgtcgccgtcgac
gacgacggctcgccgctgccgttccaagaagttctcaagcggttccgccggaagcacgat
gtcgcgaaggcccgcgagaacgtctcggtgcgccccgtcttcttcgactgtctgcacgcc
gacggcgaggacctgctcgcggacccgctgacgacccgccacgaccggctccggtcggtg
ctggtcgattccggtgccgatggcgatgcgggcgacgcggtcgcggacgaggacatcgag
ggcctctccctgctctggaccaccgacgatcccgacgagatcgagtcgatcgacgccgac
gcgctcgaggccggccacgaggggatcatgctcaaggatcccgaatcgacctactcgccg
ggccgacgggggaaacactggcgcaagcgcaagccggacgtggagaccatcgactgcgtc
gtcaccggtgccgagtggggcgagggccgacgcgcgaccttcctcgggaccttcgaactc
gccgtgcgcgcgggtgacgagttcgagaccgtcggcaaagtcgcaaccgggatcaccgac
gagaaattagaagagctgaccgacctgctcgagccccacatcgtcgccgaggcgggacag
gaagtcgacctcgagcccgcggtcgtcttcgaggtcggctacgaggagatccagtcctcg
ccgacttactcgtcgggctatgcgcttcggttcccgcggtttctgggcgtgcggtacgac
aaggaccccgagggcgcggactcgctcgagcgcttacagcgcctgcaggcgtga

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