Natrinema pellirubrum: Natpe_3424
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Entry
Natpe_3424 CDS
T02425
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
npe
Natrinema pellirubrum
Pathway
npe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Natpe_3424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npe03019
]
Natpe_3424
Messenger RNA biogenesis [BR:
npe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Natpe_3424
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AGB33208
UniProt:
L0JQW3
LinkDB
All DBs
Position
3337327..3338673
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AA seq
448 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDIVIFDMGLNLSKVLIHDNIRTEGMHSLDLIDMGA
IPDDRIMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPIIASPFTLELVKGELEEEGK
FDADNELIAMDPGETTSIGDSGVLDLEFVNVTHSIVDAINPVLHTPEGAVVYGLDKRMDH
TPVIGDPIDMERFREIGREGEGVLAYIEDCTNANKKGRTPSESVAREHLRDVLYSMEDYD
GGIVATTFSSHIARVKSLIEFARDIGRQPILLGRSMETYSGTAKQIGIDFPSDVEMVGYR
QSIEQTFERIMNEGKENFLPVVTGHQGEPRATLTRMGRGETPYELEDGDKVVFSARVIPE
PTNEGQRYQAEKLLRMQGARIYDDIHVSGHLCQEGHYEMLDELQPEHVIPAHQNMSGFSG
YVDLASNQGYKLGRDLHVTSNGNIIDLV
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaattgcgacgatcggcggttacgaggaagtcggccgacagatgacggct
gtccgcgctggcgacgacatcgtgatcttcgacatgggcctgaacctgtcgaaggtactc
attcacgacaacatccgaaccgaagggatgcacagtctcgatctgatcgacatgggtgcc
attccggacgatcggatcatgagcgacctcgagggcgacgtccaggcgatcgtgccgacc
cacggtcacctcgaccacatcggtgcgatcagcaaactcgcacaccggtacgacgccccc
atcatcgcctccccgttcacgctcgagctggtcaaaggcgaactcgaggaggaaggcaag
ttcgacgccgacaacgaactgatcgcgatggatcccggcgagacgacctcgatcggcgac
agcggcgtcctcgacctcgagttcgtcaacgtcacccactccatcgtcgacgcgatcaat
cccgtcctccacacgcccgaaggcgccgtcgtctacgggctggacaaacggatggaccac
acccccgtcatcggcgatccgatcgacatggagcggttccgcgagatcggccgcgagggc
gagggcgtcctcgcctacatcgaggactgtaccaacgcgaacaagaagggccgaacgccc
tccgaaagcgtcgcccgcgaacacctccgcgacgtcctctacagcatggaggactacgac
ggcggcatcgtcgcgacgacgttctcgagtcacatcgcgcgcgtgaagtctctcatcgag
ttcgctcgagatatcggtcggcagccgattctgctgggccgctcgatggagacgtactcc
ggcaccgcgaaacaaatcgggatcgacttcccgtccgatgtcgagatggtcggctaccgc
caatccatcgagcagacgttcgagcggatcatgaacgagggcaaggagaacttcctgcct
gtcgtcactggacatcagggcgaaccgcgtgcgaccctcacccgcatgggccgcggcgag
acaccctacgaactggaagacggtgacaaggtcgtcttctcggcacgagtcattccggag
ccgaccaacgagggccagcgctaccaggccgagaaactcctccgcatgcaaggtgcgcgc
atctacgacgatattcacgtctcggggcacctctgtcaggagggtcactacgagatgctc
gatgagttgcagcctgaacacgtaattccggcccaccagaacatgagcggcttctcggga
tacgtcgatctggcctctaatcaggggtacaagctcggacgggatctgcacgtcacctcg
aacgggaatatcatcgacctcgtctga
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