Natrinema pellirubrum: Natpe_4444
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Entry
Natpe_4444 CDS
T02425
Name
(GenBank) ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
npe
Natrinema pellirubrum
Brite
KEGG Orthology (KO) [BR:
npe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npe03400
]
Natpe_4444
Enzymes [BR:
npe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Natpe_4444
DNA repair and recombination proteins [BR:
npe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Natpe_4444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
AAA_16
DEAD
DUF2800
Motif
Other DBs
NCBI-ProteinID:
AGB34132
UniProt:
L0JU17
LinkDB
All DBs
Position
pNATPE02:complement(240509..244147)
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AA seq
1212 aa
AA seq
DB search
MTEEPEEIQLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPEKIVTI
TFTRKAAAELTERVREEVYDRLEAVDSPEAYHRWRNVLDDLEDGYVHTIHAFCTRLLRER
AVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDEDDVELLAQLWSRDQLVDTLAGLLD
ERPQSESVLEAWRDAEVDDYVDICWEVVCDLDVADARQTLFADGLLEQLRTVAGRVDREG
AIADEDGLGVYRTFTEVATTLPANPEESDPRDCQRAILDLYEACEKKNGGLYSSSGYVVG
DRDEWNEYGDVYDDLKDAIDAVIAAVEPHADAVETTPGELEANSAHYALALMRVFDDVLA
AYADEKERRDTLDFPDVIETTLEFLRTNDAVTERLREQFAAVMVDEFQDTDPRQWELVKL
LTGVDEQTASNVFLVGDEKQSIYGFRGADVTTFGEARAELQTVNEARGVDDVPDSDAESP
TALELSGNFRTLDEPLSFLNELFEYLFQPEGDSHEPHEAPPQELTTQRDRIEDIEGLTGS
VEYLAVPDDADTAAELFGGDHPVAEGALDHTIEAEAQALAARLTNLFDDPPTVQDPDTGV
HRDATPDDTAILLRRRTHLDRYQRALEEYDIPYTVVGGVGFYDTPEVQALTNLLRVLGDP
QDDVSLYGVLRSPLFGFTDDRLAPAVAEADSVWDALAETDDPQLADAFDLLTTWRTLSGC
ATPSEDGVLPWYRLLSRVIDDTGYLASVSADERGHQAVENVEKFRDQVRTWSENGVHTAA
GLLHRIDRQAEIDPREGEADIPGDVEGVRIMTIHAAKGLEFPIVTVPDLGSDLNFGRSVD
DHGYVRLVEGTTDAPPIPAVGAPHPNDAFAIEKTAVHEYADRRSLPQERAESKRLLYVAC
TRTRDHLLLCGTHDIDTDESGHIELGEPDDFADASRWRDWLQPILFDDQELVVEAVYEGA
TDARIGDASYTIQTPPRPVEWQSEAPTEAVDPAITVPSPPERQDAVRVAATTLVSAVADA
SENGHSYTSGGGTIGLSPTTFGTVVHRLNELRLPRDEWPSFIRQLSRMEGEEPTDNDLQA
AVCHAQDAIRFVDETEADLSLEASYDEYSVVARLDDSRIVGDIDRLLVTPDAYHIIDYKT
NDLSSTTTGALADHYRPQMLAYALALFQHDPARQVRASLRFTDVGVEEQFEWQRSELTDI
ESELRSMLALVA
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggaacccgaggagattcagctcacggaggaacaggaggatgcgctcgtccag
ggccggaacgtcgcgatcactgccggcgccgggacagggaagacgacaacgctcaccgag
cggtacgtgacgatactggccgagaacccgtcgctcacgccggagaaaatagtcacgatt
actttcacgcgaaaggctgctgccgaactgactgagcgcgttcgggaggaggtgtacgac
aggctcgaggctgtcgactcaccagaggcctaccaccgctggcgaaacgttctcgacgat
ctggaggacggctatgtccacaccattcacgcgttctgtacccggctcttgcgagaacgg
gccgtcgaggctccggttccgctcggcttcgacgtgcttgacgaagacggcgccgcgaca
ctccaacgcgaagttgtgacggagttcctcgaacgcaaccaggacgaagacgacgtggag
ctccttgcccagctctggagtcgcgaccagttggtcgatacactcgctggattactcgat
gaacgcccacagagcgagtccgtcctcgaggcgtggcgtgacgccgaggtcgacgactac
gtcgatatctgctgggaggtcgtttgtgatctcgacgttgccgacgctcgacagacgctg
tttgcggacggactccttgagcagctacgcacggtcgcgggccgcgtcgaccgtgagggc
gctatcgccgacgaggacggccttggggtctaccggaccttcaccgaggtcgcgacgaca
ctccctgccaaccccgaggaaagcgatccccgcgactgtcagcgggcaatcctcgacctc
tacgaggcctgtgagaagaagaacggtggcctgtacagcagttcgggatacgtcgtcggt
gaccgggacgagtggaatgagtacggtgacgtctacgacgacctgaaggacgctatcgac
gcggtcatcgcggccgtcgaaccgcacgcggatgcagtcgagacgacacccggtgagctc
gaagcaaacagcgcccattacgcgctggctctgatgcgggtcttcgatgacgtcctcgcc
gcctacgccgacgagaaagagcgtcgcgatacgctcgacttccccgacgtgatcgagacc
acccttgagttcttgcgaacgaacgatgccgtcacggagcggctacgagagcagtttgcg
gccgtgatggtcgacgagttccaggacacggacccgcgccagtgggagctggtcaagctc
ctcacgggcgtcgacgagcagacggcgtcgaacgtctttctggtcggcgacgagaaacag
agtatctacggattccgtggtgccgacgtgacgacgttcggggaagcgagagcggaactc
cagactgtcaacgaagcccgtggggtcgacgacgtccccgacagcgatgccgagagtccg
accgcgctcgaactctccgggaacttccggacgctggatgagccgctgtcgttcctgaac
gagctcttcgagtacctgttccagccggagggtgacagccacgaaccccacgaagcgcca
ccgcaggagttgaccacacaacgcgaccgtatcgaggacatcgagggactgaccgggagt
gtcgagtatctcgctgtgcccgacgacgccgacacggcggcggaactcttcggcggtgac
catccggttgctgaaggtgcgctcgaccacaccatcgaggccgaggcgcaagcgctcgct
gctcgactgaccaacctgttcgacgatccaccgacagtccaagaccccgacacgggtgtt
catcgcgacgctacgccggacgacacggcaatcctcctccgccggcgaacccatctggat
cggtatcagcgggcccttgaggagtacgacattccctatactgtcgtcggtggcgtcgga
ttctacgatacgcccgaggtccaggcgctgacgaacctacttcgggtgcttggtgatccg
caggacgacgtctctctctatggggtgcttcggtccccgctgtttggcttcaccgatgac
cgcctcgcaccggcagttgccgaggctgattcagtgtgggatgcactcgccgagacggac
gatccacagctcgcggatgctttcgacctcctcacgacatggcgtacccttagtggctgc
gcgacgccgtctgaagatggcgtcctcccgtggtaccgtctgttgtcccgagtgatcgac
gacacggggtatctggcgagcgtgagtgctgacgaacgcggtcaccaggccgtcgagaac
gtcgagaagttccgcgaccaggtccgtacttggagcgagaacggtgttcacacagctgct
gggttgctccaccggatcgaccgccaagcagagatcgacccccgagaaggggaggctgac
atccccggcgatgtggagggcgtccggataatgacgattcacgccgcgaagggactcgag
ttcccaatcgtcactgtccccgatctcggaagtgacctcaatttcgggcggtccgttgac
gatcacggctatgtccgcctcgttgaggggacgactgatgccccaccgattcctgcagta
ggtgctccccaccccaacgatgcgttcgcaatcgagaagacggcagtccacgaatatgcc
gatcgtcgctcactcccgcaagagcgtgcggaatccaaacgcctgctctacgtggcctgt
acccgaactcgggaccacctgctgctgtgtggaacacacgacatcgatactgatgagtct
ggacacatcgaactcggtgagccagatgacttcgctgacgccagccggtggcgggattgg
cttcagccaattctgtttgacgaccaagagctagtcgttgaggcggtctacgagggagct
acggacgctcgaatcggtgatgcttcatacactattcagacgccacctcggccggttgaa
tggcagtctgaggctcccacggaagcggtagaccctgcgattactgtcccctctccgccg
gaacgacaggacgcagttcgcgttgccgcaacaaccctcgtcagtgccgttgcagacgct
tccgagaacggacacagctacacgtcggggggtgggacaatcggattgagtccgaccacc
ttcggaactgttgtccatcgactcaatgagctccgtcttccacgggatgagtggccctcg
ttcattcgtcagttgagtcgtatggaaggtgaggaaccgacggataacgatcttcaggcg
gcggtgtgccatgcccaggatgcgatccggttcgtcgatgaaactgaggcggacctctcg
cttgaagcttcctacgacgagtactcagttgtcgctcgtcttgatgactcccgcatagtg
ggtgatattgaccgtcttctggttactccagatgcgtatcacatcatcgactacaagacg
aacgacctgtcttcgacgacgactggtgccctcgctgaccactatcggccgcagatgctt
gcctacgctctcgcgctcttccagcacgatcccgcacgacaggttcgtgcttcactccgg
tttaccgatgtcggcgtcgaagaacagtttgagtggcaacggagtgaactgactgatatc
gaatccgaacttcgctctatgttggctctcgtcgcctga
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