Neisseria perflava: LPB400_04410
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Entry
LPB400_04410 CDS
T07577
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
npf
Neisseria perflava
Pathway
npf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB400_04410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npf03019
]
LPB400_04410
Enzymes [BR:
npf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB400_04410
Messenger RNA biogenesis [BR:
npf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB400_04410
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QXW91487
UniProt:
A0ABD7F021
LinkDB
All DBs
Position
complement(919033..920427)
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AA seq
464 aa
AA seq
DB search
MMNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP
SLERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMD
KQTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQM
LPKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLL
ERLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTL
RVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKM
FESIKELTGSDLNVERIEGFEPHWWGIDNQYEAEAQPVQHNDSRSRREDRNKRNEYANKS
DKNSKKAEEKNDPGIVCGKIAGRTRRGRHERQPCALLQPGFGVK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atcatgaatcctttctcttcactcggtttaggcagcgaattagtctctgccctcaccgat
cagggttatgaaaacccgacgcctatccaagccgcagcaattcctaaagccttggcagga
cacgaccttttggccgcagcacaaaccggcacaggtaaaaccgccgcctttatgctgccc
agcctcgaacgcctgaaacgctacgccacatccagcacctcccctgccatgcaccctgtc
cgcatgttagtattgaccccaacccgcgaactggccgatcaaattgaccaaaatgtgcag
gcatacattaaaaatcttcctttgcgccataccgtcctcttcggcggcgtcaatatggac
aaacaaactgccgacttgcgcgccggttgcgaaatcgttgtcgctacggttggccgactg
ctcgaccacgtcaaacaaaaaaacatcaatttaaacaaagttgaaatcgttgtactcgac
gaagccgaccgtatgcttgatatgggtttcatcgacgatatccgcaaaatcatgcagatg
ttgcccaaacaacgacaaaccctgcttttctccgccactttctcaccgcctatccgcaag
cttgcgcaagattttatgcacacgcctgaaatggttgaagtggctgcgcaaaacaccacc
aacgccaatgtcgagcaacacatcattgccgttgatgcactcaaaaaacgcaacctgctc
gaacgtctgattgttgatttgcatatgaatcaagtcattgtattctgcaaaaccaaacaa
agcgtcgatcaagttacccgcgacctcgttcgccgcaacattgccgcccaatccatccac
ggcgacaaatcccaacaaagccgactggaaaccctcaatgcctttaaagaaggtacatta
cgcgttttggttgccaccgacgttgccgcgcgcggtctggatattgccgagttgcctttc
gtcatcaactacgagctgccaacccaacctgaagactacgtccaccgcatcggacgtacc
ggccgggccggtgctgacggcgttgccatttccttgatggataaaaccgaacagaaaatg
tttgaatctattaaagagctgaccggtagcgatttgaatgtggaacgcatcgaaggcttt
gagccgcattggtggggcatcgacaatcaatatgaagccgaagcgcaaccggttcagcac
aacgacagccgctctcgccgcgaagatagaaacaaacgcaacgaatacgcaaataaatca
gacaaaaactcgaaaaaagcagaagagaaaaacgatccgggtattgtctgcggcaaaatt
gccggcagaacacgtcgcggccgtcacgagcgtcagccttgcgccctactccaacctggt
tttggcgtaaaataa
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