Neisseria perflava: LPB400_06000
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Entry
LPB400_06000 CDS
T07577
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
npf
Neisseria perflava
Pathway
npf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPB400_06000 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npf03400
]
LPB400_06000 (mfd)
Enzymes [BR:
npf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPB400_06000 (mfd)
DNA repair and recombination proteins [BR:
npf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPB400_06000 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_30
UB2H
HemY_N
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QXW89585
UniProt:
A0ABD7EV95
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All DBs
Position
1242473..1245877
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AA seq
1134 aa
AA seq
DB search
MTYPIPKPREKSRWLNLSQGSLPLALARYLPHKQLKVVLTQDAEQALRLQTAWLFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKSDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTETQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSDGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQHLYLSADVFAGRLKNYGQVLPDIFGDEHTLPNVAVNRQADEPLQALK
DFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAKSVSDWQGFLSAHEPLMITVAPLAYG
FKLEDQNIAVITESDLYQYVARSSKHHRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGR
YMGLVTMDLGDETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENVALHKLGSGAWNK
AKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAV
IKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADR
FADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVIIDEEH
RFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKP
FSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQ
VMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYA
YLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFTL
YTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPEDYCPDIHERLVLYKRLAVCE
TVQQINAIHEELIDRFGLPEQPVKTLIESHHLRLAAKELGIDAIDATSEAVTVTFGKNNN
VDPTEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLKERVVAK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgacctatccgattcccaaaccccgtgaaaaatcccgttggctcaatctgtctcaaggc
tcgctgcccttggctttggcgcgttatctgccgcataagcagctcaaggttgtcttgacc
caagatgcggaacaggcgctacgccttcagacggcctggctgtttttccgtccgcacgat
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtgtcggagcgcttgtcggcgttgtggcagattaagagcggcgcggcggacgtg
ttgttcgtaccggttgccacggcgatgcagaagctgccgcctgtgccgtttctggctggg
cgcacgttttggctgaaaacagggcagactttggatataggccgtctgaaaagtgatttg
gtggatgcaggttataaccatgtttcccacgttgttgcggcaggcgagtttgccgtgcgc
ggcggtatagtcgatttgttcccgatgggcagcgaaatgccgtaccgcatcgatttgttc
gacgatgaaatcgacagcatcaaaaccttcgataccgaaacgcaacgcaccatttctccc
gtttccgaaatccgcctgctgccggcgcacgagttccccaccgacagcgaggcgcaaaaa
atcttccgcagccgcttccgcgaggaagtcgatggcaatccgaacgatgccgctgtgtac
aaagccgtcagtgacggccatttcggtgcgggcgtggaatattacctgccgctgtttttt
gaaaacgagttggaaacgctgtttgattacatcggcgaagatgcgctgtttgtctctttg
ggcgacgttcatgccgaggcaaaccgtttttggagcgacgtcaaatcgcgttatgccatg
gcgcagggcgacgaaacttatccgcctttgcttccacagcatttgtatctctctgccgat
gtattcgcaggccgtctgaaaaactatggtcaggtattgccggatatttttggtgatgaa
catacgttgccaaacgtggccgtcaaccgtcaagcagatgaaccgttgcaggcattgaaa
gattttcagacggcctttgacggacgaattttgctttgcgccgaaagtttgggacggcgc
gaaaccatgctcggtttcttgcagcaaaacggtttgaaagccaaaagcgtgtccgactgg
cagggctttttgtcggcgcatgagccgctgatgattacagtggcgccgttggcttacggg
tttaaattagaagatcaaaacatcgcggtcattaccgaatccgatctttatcaatatgtc
gcccgctcgagcaaacatcatcgtaagaaacacgccgccgtttcagacggcctgttacgc
gaccttgccgaaatcaatatcggcgatcctgttgtacacgaagaacacggtatcggccga
tatatgggcttggtcacaatggacttgggcgacgaaaccaacgaaatgatgttgctcgaa
tacgcgggcgaagcgcagctttatgtgcctgtttcgcaactgcatttaatcagccgctac
tctggtcaggcgcatgaaaacgtcgccctgcacaagctcggcagcggcgcatggaataag
gcaaaacgcaaagccgccgaaaaagcgcgcgacaccgccgccgagttgctcaatctctac
gcccaacgcgccgcccaatcgggacacaagtttgaaatcaacgagttggattatcaggca
tttgccgacggctttggctatgaagaaaccgaagaccaagccgctgccatcgccgctgtg
attaaggatttgacgcaggcgaagccgatggaccgcctagtgtgcggcgatgtcggtttt
ggcaaaaccgaagtcgccctgcgcgccgcgtttgtggcggtgatgggcggcaaacaggtc
gccgtactcgccccaaccacgcttttggtcgagcagcacgcgcaaaacttcgccgaccgc
ttcgccgatttccccgtgaaagtcgccagcctttcacgtttcaacaacagcaaagccacc
aaagccgcgctggaaggcatggcggacggtacggtcgatattgttatcggcacgcacaaa
ttggttcaagacgacatcaaatttaaaaacttaggtttagtgattatcgatgaagaacat
cgtttcggcgtgcgccaaaaagagcagctcaaacgtctgcgcgccaacgtagacatactt
accatgaccgccacaccgattccacgcaccctcagcatggcgctcgaaggtctgcgcgac
ttctcgctgattactaccgcgcccagccgccgcctcgccgtcaaaacctttgtcaaaccc
ttcagcgaaggcagcgtgcgcgaagccgtgttgcgcgaactcaaacgcggcggacaagtg
tttttcctgcacaatgaagtagatacgattgagaatatgcgcgagcggctggaaaccctg
ctgcccgaagcccgcatcggcgtggcgcacggacaactgcgcgagcgcgaactggagcaa
gtgatgcgcgactttttgcagcaacgattcaacgtgttgctctgttccaccatcatcgaa
accggcatcgacattcccaacgccaacaccatcatcatcaaccgcgccgacaaattcgga
ctggcgcaactgcaccagcttcgcgggcgcgtcggccgcagccaccaccaagcctacgcc
tacctgctcacgcccgaatacatcaccaaagacgcagaaaaacgcctcgacgccatcgcg
gcggcagacgaactcggcgcaggtttcaccctcgccatgcaggatttggaaatccgcggc
gcaggcgaaatccttggcgaagggcagtccggcgaaatgatacaggtcggcttcacgctc
tacaccgaaatgctcaagcaagccgtacgcgacctcaaaaaaggccgtcagcctgacctc
gacgcgccattgggcattaccactgaaatcaaactgcacagcccggcattactgcctgaa
gactactgccccgacattcacgagcgcctcgtcctctacaaacgcctcgccgtctgcgaa
accgtgcagcaaatcaatgccatacatgaagaactcattgatcgcttcggcctgcccgaa
caacccgtcaaaaccctcatcgaaagccaccacttacggcttgcggcaaaagaattgggc
atcgatgccattgatgcaaccagcgaagcggtaacggtaacctttggcaaaaacaacaat
gttgatccaaccgaaatcattctgctgattcagaacgacaaaaaataccgccttgccgga
gcggataagctgcgatttaccgcagagatggaaaatattgaagtgcggattaatacggtg
aagaacgtattgaagactttgaaagaaagagtggtagcaaagtag
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