Neisseria perflava: LPB400_07675
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Entry
LPB400_07675 CDS
T07577
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
npf
Neisseria perflava
Pathway
npf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB400_07675 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npf03019
]
LPB400_07675 (rnr)
03016 Transfer RNA biogenesis [BR:
npf03016
]
LPB400_07675 (rnr)
Enzymes [BR:
npf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB400_07675 (rnr)
Messenger RNA biogenesis [BR:
npf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB400_07675 (rnr)
Transfer RNA biogenesis [BR:
npf03016
]
Prokaryotic type
tRNA degradation factors
LPB400_07675 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QXW89889
UniProt:
A0ABD7EVW0
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All DBs
Position
complement(1604994..1607474)
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AA seq
826 aa
AA seq
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MNKNTKSLNLREKDPYLEREKQRYAHPLPSREWVIELLEQKGVPTKIEALAHELSITEDE
YEFFERRLKAMARDGQVLINRRGAVCAAEKLALVKCRVEAHKDGFGFAVPLTPTGEGDFV
LYERQMRGVMHGDIVTVRPAGIDRRGRREGTVLDVVERAQSKVVGRFYMDRGVAILEAED
KRLNQSIVLEPESVARFKPQSGQVIVGEIETYPEQNRPAVAKIIEVLGDYADSGMEIEIA
VRKHHLPHQFSEACVKAAKKIPDHVRKTDLKGRVDLRDLPLVTIDGETARDFDDAVFAEK
IGRNYRLVVAIADVSHYVRPDDTIDVDAQERSTSVYFPRRVIPMLPENLSNGICSLNPDV
ERLCMVCDMVITYAGNIKEYRFYPAVMRSHARLTYNQVWDWISDGRDHPFKPQIDTLYKL
FKILQKKRFERGAVEFESIETQMIFDDNGKIDKIVPVVRNDAHKLIEECMLAANVCAAEF
LLKNKHTALFRNHLGPTPEKLATLREQLGLLGLSLGGGDNPTPKDYAALAEQFKNRPDAE
LLQVMMLRSMQQAVYEPHCDGHFGLAYGAYAHFTSPIRRYPDLTVHRAIKAVLNGQTYQP
NKTWQALGVHTSFCERRADDASRDVENWLKTYYMRDKVGEVFSGKISGMTSFGIFVTLDD
IHIDGLVHISDLGEDYFNFRPEIMAIEGERSGVRFNMGDTVTVKVARADLDTSKIDLTLI
SGGSVGKKRGGRKAKPVSKPTAADKPVEKRKRKLSAKEIDEALATPVKAKKSKVKSKPAS
KPTKPSKPKAASKKKAQAKTASVKAGRKNNAQGKSVKIKVKKAAKK
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaatactaaatctttaaatttacgagaaaaagacccgtatttggagcgggag
aaacaacgttacgctcatccgttgcccagccgtgaatgggtcattgaattattggaacaa
aaaggtgtgccgacaaaaatcgaagctttggcacatgaattgtcgattacagaagatgaa
tatgaattcttcgagcgccgtctgaaagcgatggcacgcgatggccaggtgttgattaat
cgacgtggggcggtgtgtgcggcagaaaaattggcattggttaaatgccgtgtcgaagcg
cataaagacggttttggttttgccgtgccgcttacgccgacaggtgagggcgatttcgtc
ttgtatgagcgtcagatgcgcggcgtgatgcacggggatattgttaccgtgcgtcctgcc
ggtatcgaccgcagaggccgtcgcgaaggtacggttttggatgtggtggagcgtgcgcag
tctaaagtggtcggccgtttttatatggatcgcggcgtggcgattttggaggcagaagac
aaacgtttgaatcaaagcattgttttggaacctgaaagtgtagcgcgctttaaaccgcaa
tccggtcaagtcattgttggtgaaattgagacttaccccgagcaaaaccgccctgccgta
gcgaaaattattgaagtattgggtgattatgccgacagcggtatggaaatcgaaatcgcc
gtgcgcaagcaccatttgccgcaccaatttagcgaagcgtgtgtcaaagctgcgaagaaa
attcccgatcatgtgcgtaaaaccgacttgaaagggcgcgtggacctacgagatttgcct
ctggtaaccatcgatggcgaaactgcgcgggactttgacgatgcggtttttgccgaaaaa
atcggccgcaattaccgcttggtggtggcgatagccgatgtcagtcattatgtccgccct
gatgacacgattgatgtagatgctcaagaacgcagtaccagcgtgtatttcccgcgccgt
gtgattccgatgctgccggagaatttgtccaacggcatctgctcgctcaatcctgatgtc
gaacgcctgtgtatggtgtgcgatatggtgattacttatgccggcaatatcaaggaatac
cgtttctatccggcagtaatgcgttcgcatgcgcgactgacttataatcaagtttgggat
tggatttcagacggccgggatcatccgtttaaaccgcaaatcgatactctgtataaatta
ttcaaaatcttgcagaaaaaacgtttcgagcgtggcgcggttgagtttgagagcattgaa
acccagatgattttcgacgacaacggtaaaatcgacaagattgttcccgttgtacgcaac
gatgcgcacaagctgattgaagaatgtatgctggcggcgaatgtttgcgcggcagagttc
ttgctgaaaaacaaacatacggctttgttccgcaatcacttgggcccgactcccgaaaaa
ctggctactttacgcgagcagcttggtttgctgggtctgagtttgggcggcggcgataat
ccgacgccgaaagactatgctgcgcttgccgaacaatttaaaaaccgtccggatgcggag
ctgttgcaagtgatgatgttgcgttctatgcaacaggcggtttatgagccgcattgcgac
ggtcactttggtttggcttatggtgcatatgcacactttacttcgcctatccgccgttat
ccggatttgacggtgcatcgtgccatcaaagctgtattgaacggacaaacttatcaaccc
aataaaacctggcaggctttgggcgtacatacctctttctgcgagcgccgagccgatgat
gccagccgcgatgtggaaaactggctgaaaacttattatatgcgcgacaaagtcggcgaa
gtctttagtggtaagatttcgggcatgacaagcttcggtatttttgtaaccttggacgac
attcatatcgacggtttggtacacatcagcgatttgggagaggattatttcaacttccgt
cctgaaattatggcaattgagggcgaacgcagcggtgtccgtttcaatatgggcgatacg
gttactgtaaaagtcgcgcgtgccgatttggataccagcaagattgatttgaccttaatc
agcggcggttcagtcggtaagaaacgcggcggaagaaaagcgaaacctgtgagtaagccg
acagctgctgacaagcctgtcgaaaagcgtaagcgtaaactttcggctaaagaaattgat
gaagcgttggctactcctgtgaaggcaaagaagagcaaggtgaaaagtaaacctgcctct
aagcctactaagccaagcaaacctaaagccgcaagcaagaaaaaagcgcaggcgaaaaca
gcttccgtcaaagccgggcgtaaaaataatgctcaaggtaaaagcgtgaagattaaagtg
aagaaagctgctaagaaataa
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