Neisseria perflava: LPB400_09980
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Entry
LPB400_09980 CDS
T07577
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
npf
Neisseria perflava
Brite
KEGG Orthology (KO) [BR:
npf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
npf03009
]
LPB400_09980 (rlmD)
Enzymes [BR:
npf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LPB400_09980 (rlmD)
Ribosome biogenesis [BR:
npf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LPB400_09980 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltrans_SAM
UPF0020
Methyltransf_11
RrnaAD
Methyltr_RsmB-F
Methyltransf_32
Cons_hypoth95
Methyltransf_23
PrmA
PCMT
Motif
Other DBs
NCBI-ProteinID:
QXW90308
UniProt:
A0ABD7EX05
LinkDB
All DBs
Position
complement(2081095..2082420)
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AA seq
441 aa
AA seq
DB search
MSVKERYQEAEVFSLDYEGRGVARVDGKTVFIGGALPGERVTFAIHKEKKQFAEAQVETV
LKPSSERIEPACCYFDTCGGCSLQHVSFGAQVALKQRILEEQLERIGKVKPEIILPPLYG
YSWYYRDRARLSVSMDKQGRLKLGFQAKKSHDVVNIRHCHILPKHVSDRLPDVRNLLQKL
HDDGVKVKFVEFYCGKNVTVFNIRFVNQPFGQILSELRNWFDKILSGAEKAWQIWLQDHA
ESLPFYPENAPALNYTFAQFDVEMPYKPGDFTQINAQLNEVMVARAVRLLNPQKGERIAD
LFCGLGNFSLPLAKSGASVVGIEGADYLVDRARENARLNRCAENMTFSVADLFDTDEKTV
ESWGQFDKMLLDPPRNGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKA
VGIMNMFAQTSHVESIGVFEL
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaagaacggtatcaagaggcggaagttttttctttggattatgagggcagg
ggtgttgccagagtcgatgggaagactgtattcatcggcggtgcgctgcccggagagcgt
gtaacgtttgccattcataaagaaaaaaagcagtttgcagaagctcaggtcgaaacggtt
ttaaaaccttcttccgaacgcattgagccagcttgttgctattttgatacatgtggcggt
tgttcgcttcaacatgtttcctttggcgcgcaagttgcattaaagcaacggattttggaa
gagcagttggaacggataggtaaggtcaagcctgagataattttgccccctttatatggt
tactcctggtattatcgcgatagagcacgtttaagtgtttcgatggataagcaaggccgt
ctgaaactcggttttcaggccaaaaaaagccatgatgtcgtcaatatccgccattgccat
attttgcctaagcatgtgtccgataggttgcctgatgtccgcaatttgctgcaaaagctg
catgatgacggtgtgaaagtgaaatttgttgagttttattgcggaaaaaatgtgaccgta
ttcaacattcgtttcgtaaatcaaccgtttggacaaatattaagcgaattgcgtaattgg
tttgataagatattgtcgggtgctgaaaaggcatggcaaatatggctgcaggatcatgcc
gagtctttgccgttttaccctgagaacgcgcctgccctgaactatacttttgctcaattt
gatgtggaaatgccttacaagccgggtgattttacgcagattaatgcgcaattgaacgaa
gtgatggtggcaagggcggtcaggcttttaaaccctcaaaaaggggagaggattgccgat
ttgttttgcggtttgggcaattttagtttgccgctggcaaaaagtggtgcatcggttgtc
ggtattgaaggtgccgattatttggtcgatagggcaagggaaaatgcacgcctgaatcgt
tgtgccgagaatatgacgttttctgttgcagacttgttcgataccgatgaaaaaactgtt
gagtcgtgggggcaatttgacaagatgttgctggatcctccgagaaacggggcttatgct
gttgtcaaatcgctacacaagccgtttttgcctcagaagatagtgtatgtttcgtgcaat
ccatcaacatttgcacgagatgccggtgtcttggttgataagggctataagtttaaggcg
gtaggaatcatgaatatgtttgcacaaacctcgcatgttgaatccattggtgtgtttgag
ttgtaa
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