Natronomonas pharaonis: NP_2178A
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Entry
NP_2178A CDS
T00279
Symbol
rtcB1
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nph
Natronomonas pharaonis
Brite
KEGG Orthology (KO) [BR:
nph00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nph03016
]
NP_2178A (rtcB1)
Enzymes [BR:
nph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NP_2178A (rtcB1)
Transfer RNA biogenesis [BR:
nph03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NP_2178A (rtcB1)
Prokaryotic type
tRNA splicing ligases
NP_2178A (rtcB1)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAI49180
UniProt:
A0A1U7EVV2
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All DBs
Position
1057877..1059334
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AA seq
485 aa
AA seq
DB search
MTTFEAGNITLHKVREHVWEIPPEDGMRVPARVFASERLLEEIADDKSLQQLKNTTHLPG
IEKYAICMPDGHQGYGFPVGGVAAIDAENGCISPGAVGYDINCGVRMVKTNLTYDDVSGM
EEELVEALFDAVPTGLGGGGIVQGDRDTVDAVLERGVDWAREEGYAVKSDLEHCEDEGVR
PDADPSAVSQKAKDRGRNQLGSLGSGNHFLEVQRVTDVFDADIADAYGLEADQIVILIHC
GSRGLGHQVCNDYLRDIEQAHSGLLSKLPDKELAAAPAGSQLAEDYYGAMCAAINFAWVN
RQLITHQTRTVFADVFGEPWEDLGMELLYDVAHNIAKKEVHDVDGEDKELYVHRKGATRA
FPAGRPEVPSAYRDVGQPVIIPGSMGAGSYVLCGGEQSLDISFGSTAHGAGRLMSRTQAK
DEFWGGDVQDDLRGQEVYVKAESGATIAEEAPGVYKDVDEVVSVSDALGIGDKVVRVAPV
CNIKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgttcgaagcgggcaacatcacgctgcacaaggtccgcgaacacgtctgggag
attcccccggaggacggaatgcgggttcctgctcgcgtttttgccagcgagcggctgctg
gaggagattgccgacgacaagtcgctccagcagttgaagaacacgacccacctccccggc
atcgaaaaatacgcgatttgtatgcctgacggccatcagggctatggcttcccggtcggc
ggtgtcgcggcaatcgacgccgaaaacggctgtatctccccgggcgcggtcggctacgac
atcaactgcggcgtccggatggtgaagacgaacctcacctacgacgacgtcagcggcatg
gaggaagaactcgtcgaggcgcttttcgatgcggtcccgacagggctcggcggcggcggt
attgtccaaggcgaccgggacaccgtcgacgccgtcctcgaacggggtgtcgactgggct
cgcgaggagggctacgccgtcaaatcggacctcgaacactgtgaggacgaaggcgttcgc
ccggatgccgacccgtcggccgtctcacagaaggccaaggaccgcggccgaaaccaactc
ggctcgttgggctccggtaaccacttcctcgaggtccagcgcgtcaccgatgtcttcgac
gccgacatcgccgatgcctacggcctcgaagccgaccagattgtcatcctcatccactgt
ggctcccgtggcctcggccaccaggtctgcaacgactacttgcgcgacatcgaacaggcc
cacagcgggctgctctcgaagctgcctgacaaggagctggcggccgccccggccggctca
cagcttgctgaggactactacggcgcgatgtgtgcagccatcaacttcgcgtgggtcaac
cgccagctcatcacccaccagactcggacggtctttgccgatgtcttcggcgagccgtgg
gaggacctcgggatggagctgctctacgatgtggcccacaacatcgccaaaaaggaggtc
cacgacgtcgacggcgaggacaaggagctgtacgtccaccggaagggggccacgcgggcg
ttcccggccggccgtccggaagtgccgtcggcgtatcgagacgtcggccagccggtcatc
atccccggcagcatgggtgcggggtcgtacgtgctctgcggcggcgagcagtccctcgac
atttcgttcggctcgaccgcccacggggccggccggctgatgagccgcacgcaggccaaa
gacgaattctggggtggcgacgtacaggacgacctccgcggccaggaggtctacgtcaag
gccgaaagcggcgcgacaatcgccgaggaggcccctggcgtctacaaggacgtcgacgag
gtggtcagcgtttccgacgcgctcggcatcggcgataaggtcgtccgcgtcgcaccggtc
tgcaacatcaaagggtga
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