Natronomonas pharaonis: NP_3998A
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Entry
NP_3998A CDS
T00279
Symbol
cdc48b
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nph
Natronomonas pharaonis
Pathway
nph04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NP_3998A (cdc48b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nph03019
]
NP_3998A (cdc48b)
03009 Ribosome biogenesis [BR:
nph03009
]
NP_3998A (cdc48b)
04131 Membrane trafficking [BR:
nph04131
]
NP_3998A (cdc48b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nph04147
]
NP_3998A (cdc48b)
Messenger RNA biogenesis [BR:
nph03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NP_3998A (cdc48b)
Ribosome biogenesis [BR:
nph03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NP_3998A (cdc48b)
Membrane trafficking [BR:
nph04131
]
SNARE
SNARE associated proteins
Others
NP_3998A (cdc48b)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NP_3998A (cdc48b)
Exosome [BR:
nph04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NP_3998A (cdc48b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_14
AAA_22
AAA_5
RNA_helicase
nSTAND3
NPHP3_N
AAA_7
AAA_33
IstB_IS21
Mg_chelatase
AAA_28
DUF815
AAA_3
Parvo_NS1
ABC_tran
Sigma54_activat
TsaE
AAA_18
ATPase
AAA_30
AAA_11
NB-ARC
AAA_19
AAA_24
AAA_17
Sigma54_activ_2
AAA_lid_PRS2_C
Zeta_toxin
bpMoxR
SLFN-g3_helicase
AAA_25
ResIII
Vps4_C
PhoH
Bac_DnaA
ATP-synt_ab
Zot
Cytidylate_kin2
Motif
Other DBs
NCBI-ProteinID:
CAI50090
UniProt:
A0A1U7EY17
LinkDB
All DBs
Position
1946516..1948795
Genome browser
AA seq
759 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRAAMDELDVENGDYVVLDSGDSRAVARVWPGYPEDEGNG
VVRVDGRLRQEADVGIDDNVHIEPADVNPAKEVTVALPQNLRIRGNIGPHIRDKLSGQAV
TEGQNVPFSLGLGPLSSKSGQRIPLKIAGTEPSGTVVVTDSTEIQVSEKPAEQIAGPSDG
SGAAPGEGGTPSVTYEDIGGLDSELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPG
TGKTLMAKAVANEIDAHFTDISGPEIMSKYYGESEEQLREVFDEASENAPAIVFIDEIDS
IAPKRGETSGDVERRVVAQLLSLMDGLEERGDVIVIGATNRVDAIDPALRRGGRFDREIE
IGVPDKEGRKEILQVHTRGMPLADGIDLEQYAENTHGFVGADLESLTKEAAMNSLRRIRP
ELDLEQDEIEAEVLESMTVTESDFKDALKGVTPSAMREVFVEVPDTTWDAVGGLDDTKSR
LRETIQWPLEYPEVFKQMDMQAAKGVLLYGPPGTGKTLMAKAIANEAQSNFISIKGPELL
NKYVGESEKGVREVFEKARSNAPTVVFFDEIDSIAGERGERMGDSGVGERVVSQLLTELD
GLEELEDVVVIATTNRPDLIDSALLRPGRLDRHIHVPVPDEEAREAIFAVHTRNKPLADD
VDISELAGRTDGYVGADIEAVCREASMAATREFIESVSPEEAAQSVGNVRITAEHFEEAL
DEVGPSVSEDTRERYEEVEEEFTPGEEPSGKSDVGRTFH
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgactgtcaaacccctcaagcagaaagacgccggccgcgggttggccgccatc
gaccgcgccgccatggacgaactcgacgtcgagaacggcgactacgtcgtcctcgatagc
ggcgactcccgcgccgtcgctcgcgtgtggcccggctatcccgaagacgaaggcaacggc
gtcgtccgcgtcgacggtcggcttcggcaagaggcagacgtcggcatcgatgacaacgtc
cacatcgagccggccgatgtcaaccccgccaaggaagtgactgttgcgctgccgcagaac
ctccgcattcgcggaaacatcggcccgcatattcgcgacaagctcagcgggcaggcggtc
acggagggacagaacgtgcccttctcgctcggcctcggcccgctctcgtcgaagagcggc
cagcggattccgctgaaaatcgccggcacggagccgagcggcaccgtcgtcgtcaccgat
tcgacggagattcaggtcagcgaaaagccggccgagcagatcgccgggccttccgatggg
tcgggagcggcgcccggcgagggcggcacgccctcggtgacctacgaggacatcggcggc
ctcgacagcgagctcgaacaggtccgtgagatgatcgagctgccgatgcgacacccagag
ctgttccagcagctcggcatcgagccgccgaaaggtgtcctcctacacggcccgccgggg
actgggaagaccctgatggcgaaggctgttgccaacgaaatcgacgcccactttacggac
atctccggccccgagatcatgtcaaaatactacggggaatccgaagaacagctccgtgag
gtgttcgacgaggcctcggaaaacgcgcccgcgatcgtcttcatcgacgaaatcgactca
atcgcgcccaagcggggcgagaccagcggcgatgtcgagcgtcgggttgtcgcgcaactg
ctgagcctgatggacggtctcgaagagcgcggcgatgtcatcgtcatcggcgcaaccaac
cgcgtcgatgcgattgaccctgcgctccgacgcggcggccgcttcgaccgcgaaatcgaa
atcggcgtccccgacaaggagggccgcaaggagattctgcaggtccacacccgcggaatg
ccgctggctgacggcatcgacctcgaacagtacgccgaaaacacccacggcttcgtcggc
gcggacctcgaaagcctaaccaaagaagccgcgatgaactcgctgcggcgcattcggccg
gagctcgacctcgagcaggacgaaatcgaggctgaggtccttgagtcgatgactgtcacc
gagagcgacttcaaagacgcgctcaagggcgtcacgccgtcggcgatgcgagaggtcttc
gtcgaggtacccgacaccacctgggatgcggtcggcggtctcgatgacaccaaatcgcgg
ctccgcgagaccatccagtggccgctggagtaccccgaggtgttcaagcagatggacatg
caggccgccaagggcgtcctcctgtatggcccgcccggcaccgggaagaccctgatggca
aaggccatcgccaacgaggcccaatcgaacttcatctcgatcaagggtccggagctgctg
aacaagtacgtcggcgaatccgagaagggcgtccgcgaagtcttcgagaaggcacggtcg
aacgctccgactgtcgtcttcttcgacgaaatcgactccatcgccggcgaacgcggcgaa
cggatgggcgactccggcgtcggcgagcgcgtcgtctcccagcttctgaccgagctggac
ggcctcgaagaactcgaagacgtggtcgtcatcgcgacgacgaaccgtcccgacctcatc
gactcggcgcttttgcgccccggccggctggaccgccacatccacgttccggttcccgac
gaggaggctcgcgaggcaatcttcgccgtccacacccggaacaaaccgctcgccgacgat
gtggacatcagcgaattggctggacggaccgacggctacgtcggcgccgacatcgaggcc
gtctgccgtgaggcctcgatggccgccacacgcgagttcatcgagagcgtctcccccgag
gaggcagcccaaagcgtcggcaacgtccgcatcactgccgaacacttcgaggaagccctc
gacgaggtcggcccaagcgtgagcgaggacactcgcgaacgctacgaggaagtcgaagag
gaattcacgcccggtgaggagccgtccggcaaatccgatgtcggccggacgttccactga
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