Natronomonas pharaonis: NP_4200A
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Entry
NP_4200A CDS
T00279
Symbol
rad25c
Name
(GenBank) DNA repair helicase Rad25
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nph
Natronomonas pharaonis
Pathway
nph03022
Basal transcription factors
nph03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nph00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NP_4200A (rad25c)
09124 Replication and repair
03420 Nucleotide excision repair
NP_4200A (rad25c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nph03021
]
NP_4200A (rad25c)
03400 DNA repair and recombination proteins [BR:
nph03400
]
NP_4200A (rad25c)
Enzymes [BR:
nph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NP_4200A (rad25c)
Transcription machinery [BR:
nph03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NP_4200A (rad25c)
DNA repair and recombination proteins [BR:
nph03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NP_4200A (rad25c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
AAA
AAA_25
TetR_C_15
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAI50191
UniProt:
A0A1U7EYA5
LinkDB
All DBs
Position
complement(2039158..2041032)
Genome browser
AA seq
624 aa
AA seq
DB search
MSNRCVVTADPDIASADADADIDIETFYDALAAARRPVVTAEDLATTAGCTVEVANEALA
ALADESEVQRLDVDDESAVWAPERTAGATERVTVFPERRDIVVDEPEQYTRALLTQFAHL
EETNSESGYIYAVREEDIWNAPYESLPELLATIRSALGGHHEALESWVEGQWERAHKFRL
TTHEDGYVVLEAKSADLLGNVAEPRLDDGVLRARLDDETAWVAEERTADLKQTLYEAGYP
VQDHRNLDTGDPLPMDLTLELRPYQSDWIARFADAGSGVLVGPPGSGKTVAALGIMADIE
GETLILVPSRELAAQWRENLLNETTLSPEQVGEYHGGSKEIRPVTIATYQTAGMDRHRSL
FDSRKWGLIVYDEVHHIPSPVHRRSAQLQTKHRLGLTATPVRETDDQQQIYTLVGQPIGT
NWEALFEAGYVAEPEVEIRFLPWASETHRNEYGSATGHEKRQLAATNPAKIREISAILHE
NRGSKAIVFVEYIEQGDQIAEALGVPFISGETPHARRSKLFGRFRGGQLDTIVVSRVGDE
GIDLPDTEVAIAASGLGGSRRQGAQRAGRTMRPVGKARMYVLATRGSREEDFARKRTKHL
AARGVRVQEAEPLAFGDGRVADEE
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggtgtgtagtgacagccgaccctgacatcgcgtctgctgacgccgacgcc
gacatcgacatcgagacgttctacgacgcactggccgccgcgcgccgcccggtcgtcacc
gccgaggacctcgccacgacagccggctgtaccgtcgaggtcgctaacgaggcgcttgcc
gccctcgctgacgaaagcgaggtccaacggcttgatgtcgacgacgagtcggcggtctgg
gctcccgagcgaacagccggggccacagagcgggtcactgtctttcctgagcgtcgcgac
attgtcgtcgatgaacccgaacagtacacgcgggcacttttgacgcagtttgcccacctc
gaagagacgaacagcgagtcgggctacatttacgccgttcgggaagaggacatctggaac
gccccctacgagtcgctgccggagctgctggcgacgattcggtccgcgctcggcggccac
cacgaggcgctcgaatcgtgggtcgaaggccaatgggagcgggcccacaagttccggctt
acgactcacgaggacggctacgtggtgctcgaagcaaagagcgctgacctgctggggaac
gtcgctgaaccgcggctcgacgacggcgtcctccgtgcccggcttgacgacgagacggca
tgggtcgccgaagaacggaccgccgacctcaaacagaccctctacgaggccggctatccg
gtccaagaccaccggaatctcgacaccggcgacccgctgccgatggaccttacacttgag
ctgcggccgtatcagagcgactggatcgctcggttcgccgacgccgggtccggcgtgctc
gtcggcccgccggggtccggcaaaaccgtcgccgcgctcggcatcatggccgacatcgag
ggcgagacgctcattctggttccgtcccgagagctggccgcccagtggcgggagaatctc
ctcaacgagacaacactgtcgccggaacaggtcggcgagtaccacggcggcagcaaggaa
atccgcccggtaacgatagcgacctaccagaccgccgggatggaccgccatcggagcctc
ttcgattcgcggaagtgggggctcatcgtctacgacgaggtccaccacatccccagcccc
gtccatcgccggagcgcccaactccagaccaaacaccggcttgggctgacggcgacgccg
gttcgggaaacagacgaccaacagcagatatacaccctcgtcggccagcccatcggaacc
aactgggaggcgctgttcgaggccggctacgtcgccgagccggaggtcgaaatccggttt
ctgccgtgggcgtccgagactcaccgcaacgagtacggctcggcgaccggccacgagaaa
cgacagttggcggcaacgaacccggcgaagatacgggagatatccgccatcctgcacgag
aaccggggctcgaaagccatcgtcttcgtcgaatacatcgagcagggcgaccaaatcgcc
gaagcgctcggcgtcccgttcatcagcggtgagacgcctcatgcccgtcggagcaagctc
tttggccggttccgcggcggccaactcgatacgattgtcgtctcccgggtcggcgatgag
ggcatcgacctgccggacactgaggtcgccattgccgcctccggactcggcggctcccgc
aggcagggcgcacagcgagccggtcggacgatgcgccccgtcgggaaagcacggatgtac
gtcctcgcaacgcgggggtcccgcgaggaggacttcgcccgcaagcgaaccaagcactta
gccgctcgcggggttcgcgtccaagaggccgagccgctcgccttcggcgacggccgcgtc
gccgacgaagaatga
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