Nocardioides piscis: G7071_05615
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Entry
G7071_05615 CDS
T07459
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
npi
Nocardioides piscis
Pathway
npi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7071_05615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npi03019
]
G7071_05615
03009 Ribosome biogenesis [BR:
npi03009
]
G7071_05615
Enzymes [BR:
npi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G7071_05615
Messenger RNA biogenesis [BR:
npi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G7071_05615
Ribosome biogenesis [BR:
npi03009
]
Prokaryotic type
rRNA helicases
G7071_05615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
AAA_19
adh_short
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIK77270
UniProt:
A0A6G7YKL0
LinkDB
All DBs
Position
1129383..1131116
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AA seq
577 aa
AA seq
DB search
MSPAVLKALADVGYESPSMIQAQTIPPLLEGRHVVGLAQTGTGKTAAFALPILSQLDLSQ
KAPQALVLAPTRELALQVSEAFEKYGAHMKGVHVLPIYGGQGYGVQLSALRRGVHVVVGT
PGRIMDHLEKGTLDLSQLRFLVLDEADEMLKMGFAEDVETILSDTPEDKHVALFSATMPS
QIRRISKKYLHDPVEITVKNKTTTAANITQRYLICSYPQKVDALTRILEVENFEGMIVFV
RTKNETELLAEKLRARGFSAMAINGDVPQVQRERTVNQLKSGKLDILVATDVAARGLDVE
RISHVVNYDIPTDTESYVHRIGRTGRAGRKGDSIAFVTPREKHLLRAIEKATRQPLTQMQ
IPTIEDINSTRLSRFDDAITEALAGDKLDFFRDVVTHYISEHDVPEVDVAAALAAVMYGD
NPLLMEPEPAPVRREFDNREQRPERGGGRKPERRPRGRTDVDMASYRISVGKRHKVEPRQ
IVGALANEGGLSRGDFGHIDIRPDFSLVELPRTLPPGTLDRLASTRISGKLIEIRQDGGP
PARRAQARSGADSASSDGGSSTYGDSDSRTKKPRHKK
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
ctgtcgccggcggtgctgaaggcgctcgccgacgtcggctacgagtcgccgtcgatgatc
caggcgcagaccatcccaccgcttctcgaggggcgccacgtcgtggggctcgcgcagacg
ggcaccggcaagacggccgccttcgcgctgcccatcctgtcccagctcgacctgtcgcag
aaggcgccccaggcgctcgtgctggcgcccacgcgtgagctcgccctccaggtctccgag
gcgttcgagaagtacggcgcccacatgaagggcgtccacgtcctgccgatctatggcggc
cagggctacggcgtccagctctcggcgctgcgccgcggcgtccacgtcgtggtcggcacg
ccgggccggatcatggaccacctcgagaagggcaccctcgacctctcgcagctgcgcttc
ctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgccgaggacgtcgagacg
atcctgtccgacacccccgaggacaagcacgtcgcgctcttctcggccacgatgcccagc
cagatccgccggatctccaagaagtatctccacgacccggtcgagatcaccgtcaagaac
aagacgaccacggccgccaacatcacccagcgctacctcatctgctcctacccgcagaag
gtcgacgccctcacccgcatcctcgaggtcgagaacttcgaggggatgatcgtcttcgtc
cggaccaagaacgagaccgagctgctggccgagaagctgcgggcgcgcggcttctccgcg
atggccatcaacggtgacgtcccgcaggtccagcgcgagcggaccgtcaaccagctcaag
tcgggcaagctcgacatcctggtcgccacggacgtcgcggcccgcgggctcgacgtcgag
cggatcagccacgtcgtcaactacgacatccccaccgacaccgagtcctacgtccaccgc
atcggccgcaccggccgtgccggtcgcaagggcgactcgatcgccttcgtcaccccacgc
gagaagcacctgctgcgggcgatcgagaaggcgacccgccagccgctgacccagatgcag
atcccgacgatcgaggacatcaactccacgcggctgtcccgcttcgacgacgcgatcacc
gaggcgctcgccggcgacaagctcgacttcttccgcgacgtggtgacccactacatctcc
gagcacgacgtgcccgaggtcgacgtcgccgcagcgctcgccgccgtgatgtatggcgac
aacccgctcctgatggagccggagccggctccggtccgccgcgagttcgacaaccgcgag
cagcgccccgagcgtggcggcgggcgcaagcccgagcgtcgtccccgcggccgcaccgac
gtcgacatggcgtcctaccggatctccgtcgggaagcgccacaaggtggagccgcgtcag
atcgtcggcgcgctcgccaacgagggcggtctctcgcgtggggacttcggacacatcgac
atccggcccgacttctccctcgtcgagctgccgcgcaccctgcccccgggcaccctcgac
cgcctcgcgagcacccggatctccggcaagctgatcgagatccgccaggacggcggccct
ccggctcgccgcgcgcaggcccgctccggcgccgactccgcctcctcggacggcggctcg
tcgacgtacggcgacagcgactcccgcaccaagaagccccgccacaagaagtga
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