Natrinema pallidum: FGF80_03155
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Entry
FGF80_03155 CDS
T06072
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
npl
Natrinema pallidum
Brite
KEGG Orthology (KO) [BR:
npl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
npl03016
]
FGF80_03155
Enzymes [BR:
npl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FGF80_03155
Transfer RNA biogenesis [BR:
npl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FGF80_03155
Prokaryotic type
tRNA splicing ligases
FGF80_03155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QCW02290
UniProt:
A0A4P9TF20
LinkDB
All DBs
Position
656238..657704
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AA seq
488 aa
AA seq
DB search
MTTFDADGITLERVREYVWEIPQDGDMRVPARVLASEALLEEIKEDKTLEQIKNTTHLPG
ITNYAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMRTNLTYDEVRGH
EEELVDSLFANVPSGLGGGGIVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEGMR
EGAEPEKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDADVGEAYGLEEDRIVVLIHC
GSRGLGHQTCNDYLRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVN
RQLIMHRTRQVFERVFDRSWEEMEMELLYDVAHNIAKKETHTVGADGEERELYVHRKGAT
RAFPAGHPEVPSAYRDVGQPVIIPGSMGAGSYVLRGGENSMDLTFGSTAHGAGRLMSRTQ
AKDEFWGGDVQQDLADQQEIHVKAQSGATIAEEAPGVYKDVDEVVRVSDELGIGDRVART
FPVCNIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccttcgacgccgacggcatcacgctcgagcgggtgcgcgagtacgtctgggag
atcccccaggacggggacatgcgtgttcccgcacgggtactggcgagcgaagcgctgctc
gaggagatcaaggaggacaagaccctcgaacagatcaaaaatacgactcacctgccggga
atcacgaactacgcgatttgcatgcccgacggacatcagggctacggcttcccggtcggc
ggggtcggcgcactcgacgccgaaaacggctgtatttcgccgggcgcagtcggttacgac
atcaattgtggcgtccgaatgatgcggacgaacctgacctacgacgaggtgcggggccac
gaggaggaactcgtcgactccctgttcgccaacgttccgtcggggctcggcggcggcggc
atcgtcgaggccggcgtcgacaccgtcgacgaaatcctcgcccgcggcgtcgactgggcg
ctcgagaacggccacgccgtcgaggacgacctgctgcactgtgaggacgaagggatgcgc
gagggcgcagagcccgagaaagtgagccagaaagccaaagaccgcggaaagaaccagatc
ggctcgctgggatcgggcaaccacttcctcgaggtccagcgcgtgaccgatgtcttcgat
gcggacgtaggcgaggcctacgggctcgaggaagaccggatcgtcgtgttgatccactgt
ggctcccgcggtctggggcatcaaacctgcaacgactacctgcggaagatcgaacagcag
catcagggactgctggaccagttgcccgacaaggaactcgcggccgcgcctgcgggttca
cagctggctgaggactactacggcgcgatgaacgcggcgatcaacttcgcgtgggtcaac
cggcagctgatcatgcaccgcacgcggcaggtcttcgagcgcgtgttcgatcggtcgtgg
gaggagatggagatggaactgctgtacgacgtggcccacaacatcgcgaagaaggagacc
cacacggtcggggcggacggggaagagcgcgaactctacgtccaccgcaagggggcgacg
cgggcgttccccgccggccatcccgaagtcccgtcggcctaccgtgatgtcggccaaccg
gtgatcatccccggcagcatgggcgctggcagctacgtcctccgaggcggcgagaattcg
atggacctgacgttcggctccaccgcccacggtgccggccggctgatgagccgtacgcag
gccaaagacgagttctggggcggcgatgtccaacaggacctcgcggaccagcaggagatc
cacgtcaaggcccagtccggagccacgatcgccgaggaagcgccgggcgtctacaaggac
gtcgacgaggtcgtccgcgtctccgacgaactcgggatcggcgacagggtcgcgcggacg
ttccccgtgtgtaacatcaagggctag
DBGET
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