Novosphingobium pentaromativorans: JI59_01350
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Entry
JI59_01350 CDS
T03399
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03030
DNA replication
npn03430
Mismatch repair
npn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI59_01350
03430 Mismatch repair
JI59_01350
03440 Homologous recombination
JI59_01350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npn03032
]
JI59_01350
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_01350
Enzymes [BR:
npn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JI59_01350
DNA replication proteins [BR:
npn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JI59_01350
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JI59_01350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AIT78552
LinkDB
All DBs
Position
303019..306624
Genome browser
AA seq
1201 aa
AA seq
DB search
MPFSPFVPLRIFSSFTMLDGSIDPKAIAKLAKERKFPAIAICDRNGLYGAPTFAGACMDA
GVQPVVGTFLAVARPGAVAQGQDLPIDWLALFAQNEDGWLNLCRHVSRAHLDRPLELDPH
VELESLRGHTDGLICLTGGNEGALARLYADDRPEAAERYCDALQGLFGDRLYIEITRTGE
PEEDASEEDLIALAYERDIPLVGSNPAQYSEASFHSAHDGMLCIANSTQVDAPDRPRSSS
ERWVKPVDVMQELFADLPEAIANTMVVAQRCAFAPPRRKPLLPSLAGDREGEARMLVDDA
RRGLARRLLPYWPDVSEDELDEALAFKGDERKAAYETLREKGVSEDFLAYADRLDFETQI
IIGMGFPGYFLIVADFIKWAKDNGIPVGPGRGSGAGSLVAWALTITDLDPLRLGLLFERF
LNPERVSMPDFDIDFCETRRGEVIRYVQRKYGHDHVAQIITFGKMKARAVLRDCGRILQM
GYGRVDSLCKMVPNHPTDPWNLTEALNGRKEHGVTKDPPVAEFRREYDTDPEVRRMVDLA
VQLEGLPRNSSTHAAGVVIGDRPLEKLVPLYRDPRSDMPVTQFDMKSVEDTGLVKFDFLG
LKTLSVLRKACDLLERRGIRIDLSSLGWDDPAVYELLKRGDTVGVFQLESEGMRRTLAAV
KPTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEQIEFPHEKLEGILGETYGIFVYQEQV
MQAAQILAGYSLGDADLLRRAMGKKKKEEMDKQRARFVAGCKELSDIDEPKANELFDLID
KFAGYGFNKSHAAAYALLAYHTAWLKAHYPHEFYAAAMCFDMHQSEKLAIFVDDARRNGI
ELAAPDINMSEAEFIVEETHDSHAVRYALAGIRNVGEKAMDAIVAERQANGKFVSLHDLF
KRAPAGSMNRRQLESLGAAGALDSLEPNRAKVLANADLLLAVADEASRSRSSGQAGLFGG
DDHAEPGLRLVDAEPWSRMDQMAKERENFGFYFAAHPVEQFRAVASANGARTHASLIAGG
SGGGGRSGAVMAALVENVQKRKTRKGKDFVMADFSDQSGNFSASCFEESLVENFVKWAKE
GTCVLLNVELDSPSADEPPRVTVRGARPLAEVKADARMLLRLDIDRVEAVQELALLMRPG
SPGGGEVIANLKLGNGREQKVRLGRDFALDGEFAEQLATIDGLSNISLTARRGPEGLRRA
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgccgttctcgcctttcgtcccgcttcgcatcttctctagcttcacgatgctggacggc
tcgatcgaccccaaggcgatcgccaagctggccaaggagcgcaagtttccggccatcgcc
atctgcgaccgcaatggtctctatggcgccccgactttcgccggtgcctgcatggacgca
ggggtgcagcccgttgtcgggacctttctcgccgtcgcccgtccgggggcggttgcgcag
gggcaggacctgccgatcgactggctggcgctgttcgcccagaacgaggatggctggctc
aacttgtgccgccacgtcagccgcgcccacctcgaccgaccgctggaactcgatccccat
gtggaactggaatcgctgcgcggccataccgatggcctgatctgcctcaccggcggcaac
gagggtgcgctggcgcggctctatgccgacgaccgtcccgaggcggcggagcgctactgc
gatgccctgcagggcctgttcggcgaccgcctctacatagagatcacccgcaccggcgag
cccgaggaggatgcctccgaggaagacctgatcgcgcttgcctatgagcgcgacattccg
ctggtcgggtcgaacccggcacaatattccgaggcgagctttcattccgcgcacgatggc
atgctgtgcatcgccaactccacgcaggtcgatgcaccggaccggccgcgctcttcgtcc
gagcgctgggtcaagccggtcgatgtcatgcaggaactcttcgcggacctgccggaagcc
atcgccaacaccatggtcgtcgcccagcgctgcgcctttgcgccgccgcgccgcaagccc
cttctgccaagccttgccggcgaccgcgaaggcgaggcgcggatgctggtcgacgatgcc
cggcgcggccttgcgcggcgcctgctgccctactggcccgacgtcagcgaggacgaactc
gacgaggcgctggccttcaagggcgacgagcgcaaggcggcttacgagaccctgcgcgaa
aagggcgtgagcgaggacttccttgcctatgccgaccgcctcgattttgagacgcagatc
atcatcggcatgggtttccccggctacttcctgatcgttgccgacttcatcaagtgggcc
aaggacaacggcattccggtcggcccgggccgtggttcgggtgccggctcgctggtcgcc
tgggcgctgaccattaccgacctcgacccgctcaggctgggcctgcttttcgaacgcttc
ctcaacccggaacgcgtctcgatgcctgacttcgatatcgacttctgcgaaacccggcgc
ggcgaagtgatccgctacgtccagcgcaagtacggccacgaccacgtcgcgcagatcatt
accttcggcaagatgaaggcccgcgcggtgctgcgcgactgcgggcgcatcctgcagatg
ggctacggccgcgtcgattcgctgtgcaagatggtgcccaaccatccgaccgacccgtgg
aacctcaccgaggcgctcaacggccgcaaggaacacggcgtcaccaaggacccgccggtc
gccgagttccgccgcgaatacgacaccgatcccgaagtgcgccgcatggtcgacctggcc
gtgcagctcgagggcctgccgcgcaactcctcgacccatgcggcgggcgtcgtcatcggc
gaccgcccgctggaaaagctggtcccgctttaccgcgatccgcgttcggacatgcccgtc
acccagttcgacatgaaatcggtcgaggataccgggctcgtgaagttcgacttcctcggc
ctcaagaccctgtcggtattgcgcaaggcctgcgacctgctcgaacggcgggggatcagg
atcgacctgtcgagcctcggctgggacgatccggccgtctacgaactgctcaagcgcggc
gacacggtcggcgtgttccagctggaatcggagggcatgcgccgcaccctggcggccgtg
aagccgaccaacttcggtgacatcatcgcgctcgtctcgctgtatcgaccgggcccgatg
gacaacatcccgctcttcggccgccgcaagaacgggctggagcagatcgagtttccgcac
gagaagctcgagggcatcctcggcgaaacttacggcatcttcgtctatcaggagcaggtc
atgcaggccgcgcagatcctggcgggctattcgctcggcgatgcagacttgctgcgccgc
gcgatgggcaagaagaagaaggaggagatggacaagcagcgtgcccgcttcgtggccggc
tgcaaggaactatccgacatcgacgagcccaaggccaacgaactgttcgacttgatcgac
aagttcgccggctatggctttaacaagtcgcacgcagccgcgtacgcgctgctcgcttat
cataccgcttggctgaaggcgcattacccgcacgaattctatgcagcggccatgtgcttc
gacatgcaccagtcggaaaagctggcgatcttcgtggacgatgcgcggcgcaacggcatc
gaactggccgcgcccgacatcaacatgtcggaagcggaattcatcgtcgaggaaacccac
gacagccacgccgtgcgctatgccttggcaggcatccgcaacgtcggtgaaaaggcgatg
gacgcgatcgttgcggagcgtcaggcgaacggcaagttcgtcagcctgcacgacctgttc
aagcgcgctccggccggatcgatgaaccgccgccagcttgaaagcctgggcgcggccggt
gcgctcgacagcctggagccgaaccgtgcgaaggtgttggccaatgcggacctgcttctg
gccgttgccgatgaagcctcgcgcagccgttcgagcgggcaggcggggctgttcggcggc
gacgatcacgccgagccggggctgcgtctcgtcgatgccgagccctggagccggatggac
cagatggccaaggagcgcgagaatttcggcttctacttcgccgcccatccggtcgagcag
ttccgcgcggtggcctcggccaatggtgcgcgcacgcacgccagcctgatcgccggcggc
tcgggcggcggcggacgatccggcgcagtcatggctgcgcttgtcgagaacgtgcagaag
cgcaagacccgcaagggcaaggatttcgtcatggccgacttctcggaccagtcgggcaat
ttctccgcgtcgtgcttcgaggaaagtctggtcgagaacttcgtgaagtgggcgaaggaa
ggcacttgcgtcctgctcaacgtcgaactggacagtccgagcgcggacgagcctccccgg
gttacggtgcgcggggcgcggccactggccgaagtgaaagccgatgcgcgcatgctgctg
cggctcgacatcgaccgggtggaggcggtgcaggaattggcgctgctgatgcgtcccgga
tcgcctggcgggggcgaggtcatcgccaacctcaagctgggcaacggacgtgagcagaaa
gtgcggctgggccgtgacttcgcgctcgacggcgaatttgccgagcagctcgcgacgatc
gatggcctctccaacatttcgctgactgcccgccgcggcccggaagggctgcgccgcgcg
gcctga
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