Novosphingobium pentaromativorans: JI59_10080
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Entry
JI59_10080 CDS
T03399
Name
(GenBank) hypothetical protein
KO
K21470
L,D-transpeptidase YcbB
Organism
npn
Novosphingobium pentaromativorans
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
npn01002
]
JI59_10080
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
npn01011
]
JI59_10080
Peptidases and inhibitors [BR:
npn01002
]
Cysteine peptidases
Family C82
JI59_10080
Peptidoglycan biosynthesis and degradation proteins [BR:
npn01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
JI59_10080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
DUF3318
Motif
Other DBs
NCBI-ProteinID:
AIT80091
LinkDB
All DBs
Position
complement(2107679..2109136)
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AA seq
485 aa
AA seq
DB search
MTSFKRFGFTALSTAMAVSLTAQPVLAQRIKTEMPEDILPKPAAAKPATATTAPATSPAP
ATIPMQSPVNPASQQPLPGANGTVSEPVVQPIFLAEPVMSWSLADAKALLSTIEYIGKEG
LLPADYQPAALKAAIAGGESDALDALASKVFAWLIEDLRDGRTPMEARVQWFAVDPDQDD
MPTAQIMAQALSDHDVPGVVDKLAPTVPDYAALKAELAVTPMANKAKRALILANMDRWRW
LARDLGDVYLLTNVPEFQLRLTVRNKIIRTYRTVVGKPGRTATPQLAETVTAVVFNPTWT
VPQSIVQGEGLGQKVLNNPRWAKAAGYKATKGADGTIYVVQQPGPTNSLGLMKIDMPNPH
AIYLHDTPAKQYFDEDVRAFSHGCIRTERAVELGMTMAILGAKMPAAEAADISRSGEYTK
VEMTRTFPVYLTYFTIARSIDGELKQFNDIYGRDKPVLDSFTQPRQLKTTQRTSDEEIIE
LDNPL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtttcaagcggttcggctttacggcgctttcgacggcgatggcggtaagcctg
acggcgcagcccgtgcttgcgcagcgcatcaagaccgagatgcccgaggacatcctgccc
aagccggctgcggccaagcccgcgacggcgacgactgctccggccacatcgcccgctcca
gcgacgatcccgatgcagtctccggtcaatcccgccagccagcagccgttgccgggcgcg
aacggcacggtgtccgaaccggtcgtgcagccgatcttcctggccgaaccggtgatgtcg
tggtcgctggccgatgccaaggcgctgctctcgacgatcgaatatatcggcaaggaaggc
ctgcttccggccgactaccagccagcagcactcaaggccgccattgccggcggcgaaagc
gatgcgctcgatgccctggcgagcaaggtcttcgcctggctgatcgaggacctgcgcgac
gggcgtacaccgatggaagcgcgggtgcagtggttcgcggtcgatcccgaccaggacgac
atgccgaccgcgcagatcatggcgcaggccctgtccgaccatgacgtcccgggcgtggtc
gacaagctggcgcccacggtgcccgactatgccgccctcaaggccgaactggcggtaacg
ccgatggcgaacaaggccaagcgcgcgctgatcctcgccaacatggaccgctggcgctgg
ctcgcccgcgacctcggcgatgtctacctgctgaccaacgtgcccgagttccagctgcgc
ctgacggtcaggaacaagatcatccgcacctaccgcacggtcgtcggcaagccggggcgc
actgcgaccccgcagctggccgagacagtgacggcggtcgtcttcaacccgacctggacg
gtcccgcaatcgatcgtgcagggcgagggcctcggccagaaagtcctgaacaacccgcgc
tgggccaaggctgccggctacaaggcgaccaagggcgctgacgggacgatctacgtcgtc
cagcagccgggaccgaccaactcgctgggcctgatgaagatcgacatgcccaacccgcac
gcgatctacctgcacgacacgcctgccaagcagtacttcgatgaggacgtccgggctttc
agccacggttgcatccgcaccgaacgcgcggtggagttgggcatgaccatggcgatcctc
ggtgccaagatgccggcagccgaagcggccgacatctcgcgctcgggcgaatataccaag
gtggagatgacccgcaccttcccggtgtacctgacctacttcaccatcgcccgctcgatc
gacggggaactcaagcagttcaacgacatctacggtcgcgacaagccggtgctcgacagc
ttcactcagccgcgccagctcaagaccacgcagcgcaccagcgacgaagagatcatcgaa
ctcgacaacccgctctga
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