Novosphingobium pentaromativorans: JI59_12425
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Entry
JI59_12425 CDS
T03399
Symbol
groEL
Name
(GenBank) molecular chaperone GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI59_12425 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npn03019
]
JI59_12425 (groEL)
03110 Chaperones and folding catalysts [BR:
npn03110
]
JI59_12425 (groEL)
03029 Mitochondrial biogenesis [BR:
npn03029
]
JI59_12425 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npn04147
]
JI59_12425 (groEL)
Enzymes [BR:
npn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
JI59_12425 (groEL)
Messenger RNA biogenesis [BR:
npn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
JI59_12425 (groEL)
Chaperones and folding catalysts [BR:
npn03110
]
Heat shock proteins
HSP60 / Chaperonin
JI59_12425 (groEL)
Mitochondrial biogenesis [BR:
npn03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
JI59_12425 (groEL)
Exosome [BR:
npn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
JI59_12425 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
JI59_12425 (groEL)
Exosomal proteins of breast cancer cells
JI59_12425 (groEL)
Exosomal proteins of colorectal cancer cells
JI59_12425 (groEL)
Exosomal proteins of bladder cancer cells
JI59_12425 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AIT80524
UniProt:
G6EB30
LinkDB
All DBs
Position
2562090..2563739
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKDVKFSRDARERILAGVDTLANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI
ELKDKFENMGAQMIREVASKANDAAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLAVTKVVENLKSRSKDVSGTAEIAQVGVISANGDREVGEKIAEAMEKVGKEGVITVEEA
KGLEFELDVVEGMQFDRGYLSPYFVTNPDKMTVELDNPYILIHEKKLSNLQAMLPILEAV
VQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLGDIATLTAGEM
ISEDLGIKLENVTLNMLGEAKKVTIDKDNTTIVDGSGSAEEIKARVEQIRAQIEVTTSDY
DREKLQERLAKLAGGVAVIKVGGASEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALL
YATKALEGLKGENDDQTRGVDIIRQSIMAPVRQIATNAGFDGAVVSGNLLRENDETQGFN
AATDTYENLVAAGVIDPTKVVRTALQDAASVAGLLITTEAAISEAKEDKPAMPMPDMGGM
GGMGGMGGF
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaaggacgtaaagttctcgcgcgacgcccgcgagcgcattctcgccggtgtc
gacaccctcgccaatgccgtcaaggtgaccctgggccccaagggccgcaatgtcgtcatc
gagaagagcttcggcgctccgcgcatcaccaaggacggcgtcaccgtcgccaaggaaatc
gaactcaaggacaagttcgagaacatgggcgcgcagatgatccgcgaagtggcctcgaag
gccaacgacgcggccggtgacggcaccaccaccgccaccgttcttgcccaggcgatcgtt
cgcgaaggcatgaagtcggttgctgccggcatgaacccgatggacctcaagcgcggtatc
gacctcgccgtgaccaaggtcgtcgagaacctcaagagccgttcgaaggacgtctcgggc
accgcggaaatcgcccaggtcggcgtgatctcggccaatggcgaccgtgaagtcggcgag
aagatcgccgaagccatggaaaaggtcggcaaggaaggcgtgatcaccgtggaagaggcc
aagggcctcgaattcgaactcgatgtcgtcgaaggcatgcagttcgaccgcggctacctg
tcgccctacttcgtcaccaacccggacaagatgactgtcgaactcgacaatccctacatc
ctgatccacgaaaagaagctgtcgaacctgcaggcgatgcttccgatcctcgaagccgtt
gttcagtcgggccgtcccctgctgatcatcgcagaggacatcgaaggcgaagccctggcc
actctggtggtcaacaagctgcgcggcggcctcaaggttgctgccgtcaaggctccgggc
ttcggcgatcgccgcaaggccatgctgggcgacatcgccacgctgaccgccggtgagatg
atctcggaagacctcggcatcaagctcgagaacgtgacgctcaacatgctgggcgaagcc
aagaaggtcacgatcgacaaggacaacacgaccatcgtcgatggttcgggttcggccgaa
gagatcaaggcccgcgtcgagcagatccgtgcgcagatcgaagtcaccacttcggactac
gaccgcgagaagctgcaggagcgtcttgccaagctggctggcggcgttgccgtgatcaag
gtcggcggcgcttcggaagtcgaagtgaaggagcgcaaggaccgcgtcgacgacgctctc
cacgctacccgcgctgccgttgaagaaggcatcgtccccggtggcggtaccgcgctgctc
tacgccaccaaggctctcgaaggcctcaagggcgagaacgacgaccagacccgcggtgtg
gacatcatccgccagtcgatcatggctccggttcgccagatcgcgaccaacgccggcttc
gacggtgcggtcgtctcgggcaacctgctgcgtgaaaacgacgagacccagggcttcaac
gcggctaccgacacctacgagaatctcgtggctgccggcgtcatcgacccgactaaggtc
gttcgcactgccctgcaggacgcggcttcggtcgccggcctgctgatcaccaccgaagcg
gcgatcagcgaagccaaggaagacaagcccgccatgccgatgcccgacatgggcggcatg
ggcggcatgggtggcatgggcggcttctaa
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