Novosphingobium pentaromativorans: JI59_13335
Help
Entry
JI59_13335 CDS
T03399
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JI59_13335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_13335
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JI59_13335
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JI59_13335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
AAA_16
Microtub_bd
SWI2_SNF2
nSTAND_NTPase5
AAA_22
DUF87
AAA_33
NPHP3_N
SRP54
Motif
Other DBs
NCBI-ProteinID:
AIT80685
UniProt:
G6EAG0
LinkDB
All DBs
Position
complement(2751457..2753643)
Genome browser
AA seq
728 aa
AA seq
DB search
MAELVIRRGLEEPDTSGHFVPHKPLRPEKSLPGKKFRIVSDYEPAGDQPTAISELVQSAQ
EGERTQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYAEFKDFFPDNAVEYF
VSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIG
SVETYSAMIFDLKAGETQDQREIIRKLVALQYKRNDAAFTRGTFRVRGDNLEIFPSHYED
MAWRISFFGDEIEEISEFDPLTGKKGAALEKIRVYANSHYVTPGPTMKQASEAIRFELTE
RLKELEAEGRLLEAQRLEQRTQFDLEMIAATGSCNGIENYSRFLTGRMPGEPPPTLFEYL
PDNALLFVDESHQTVPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQT
FAVSATPGSWEMEQTGGVFAEQVIRPTGLIDPPVTIRPVEDQVQDCINECKETAAKGYRT
LVTTLTKRMAEDLTEFMHEAGVRVRYMHSDVETLERIELIRDLRMGVYDVLVGINLLREG
LDIPECGLVCILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAIAETD
RRREKQQAFNEANGITPQTIKRRIADIVADTASRDGVVVDLEDGERNELVGHNLRAYIEE
LEQRMRAAAADLEFEEAGRLRDEIRRLEASELGLPDAQKKAPLVGRSNEGKPGTRKLRYG
KTQRKFGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggccgaactcgtcatccgccgcgggctcgaggaacccgatacctcgggccacttcgtc
ccccacaagccgctgcgacccgaaaagtctctgccgggcaagaagttccggatcgtctcc
gactacgaaccggcgggcgaccagccgaccgccatctcggaactggtgcaatcggcacag
gaaggcgaacgcacgcaagtgctgctgggggtcaccggctcgggcaagaccttcacgatg
gccaaggtgatcgaggaactgcagcgtcccgcgctgatcctggcgcccaacaagatcctt
gccgcccagctctatgccgagttcaaggacttcttcccggacaacgcggtcgagtacttc
gtttcgtactacgactactaccagcccgaagcctacgtgccccgctccgacacctacatc
gagaaggaaagctcggtgaacgaggcgatcgaccggatgcgccactcggccacgcgcgcc
ctgctcgaacgcgacgacgtgatcatcgtcgcctcggtctcgtgcctctacggcatcggc
tcggtcgagacgtactcggcgatgatcttcgacctcaaggcgggcgaaacccaggaccag
cgcgagatcatccgcaagctcgtcgccttgcagtacaagcgcaacgatgccgccttcacc
cgcggcactttccgcgtgcgcggcgacaatctggaaatcttcccctcgcactacgaggac
atggcctggcgcatctcgttcttcggcgacgaaatcgaggagatctccgagttcgatccg
ctgaccggcaagaagggcgcggcgctggagaagatccgggtctatgccaattcgcactac
gtcactcccggcccgacgatgaagcaggcgagcgaggcgatccgcttcgagctgaccgag
cgactcaaggaactggaagccgaaggccgcctgctggaagcgcagcggctggagcagcgc
acccagttcgacctcgagatgatcgccgcgaccggttcgtgcaacggcatcgagaactac
tctcgcttcctcaccgggcgcatgccgggcgaaccaccgcccacgctgttcgagtacctg
cccgacaatgccctgctgttcgtcgacgaaagccaccagacggtgccgcagatcggcgcg
atgtccaagggagaccatcgccgcaagatcacgctggccgagtacggtttccggctgccc
agctgcatcgacaaccgcccgctgcgcttcaatgagtgggatgcgatgcgcccgcagacc
ttcgctgtctcggccacgcccggcagctgggagatggagcagaccggcggcgtcttcgcc
gaacaggtcatccgtcccaccggtctgatcgacccgccggtgaccatccgcccggtcgag
gaccaggtgcaggactgcatcaacgagtgcaaggaaaccgcagcaaagggctatcgcacc
ctcgtcaccaccctgaccaagcgcatggccgaggaccttaccgagttcatgcacgaggca
ggtgtgcgcgtgcgctacatgcactccgacgtcgaaacgctcgagcgcatcgagctgatc
cgcgacttgcgcatgggcgtttacgacgtgctggtgggcatcaacctgctgcgcgagggc
ctcgacattcccgaatgcgggctcgtgtgcatcctcgatgccgacaaggaaggcttcctg
cgcagcgaaacatcgctgatccagaccatcgggcgcgctgcgcgcaacgtcgatggccgc
gtgatcctctatgccgaccgcatgaccggctcgatggagcgcgccatcgccgagaccgac
cgccgccgcgaaaagcagcaggcgttcaacgaggctaacggcatcaccccgcagacgatc
aagcgccgcatcgccgacatcgtcgccgataccgccagccgcgacggcgtggtcgtcgat
ctcgaggacggcgagcgcaatgaactggtcggccacaacctgcgcgcctacatcgaggaa
ctggagcagcgcatgcgtgctgcggcagccgacctcgagttcgaggaagcgggccgcctg
cgcgacgagatccgccgcctcgaggccagcgaactcggcctgccggacgcacagaagaag
gccccgctggtgggccggtccaacgaaggcaagccggggacgcgaaagctgcgttacggc
aagacgcaaagaaagttcggccgctga
DBGET
integrated database retrieval system
