Novosphingobium pentaromativorans: JI59_13465
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Entry
JI59_13465 CDS
T03399
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JI59_13465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_13465
Enzymes [BR:
npn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JI59_13465
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JI59_13465
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JI59_13465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AIT80711
LinkDB
All DBs
Position
complement(2775328..2776140)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTVRGLARFLEGERIARIAVNRPDLRRPFPPDLVQVMTGATVTAMGRRAKYG
LIHSDRGQTMVFHLGMSGRWRIEPERPEKHDHLVIETGSGHVLALNDARRFGSVDLVATD
GLETWGPFADMGPEPLGDALTAAHLRAAFKDRTAPIKQLLLDQSIVAGLGNIYVCEALFR
SGIRPDKAAGRVSLAALARLVPAIREVLTESIAAGGSTIRDYAQPTGELGYFATSWQVYG
REGQACTCGAPVLRFVQGGRSTFWCRRCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctacccgaagtcgaaacgaccgtgcgcggccttgcccgctttctcgagggc
gagaggattgcccgcattgcggtcaaccgccccgacttgcgccgcccatttccgcccgat
ctcgtgcaggtgatgaccggcgcgacggtgaccgcgatgggacgccgggcgaaatacggg
ttgatccatagcgaccgcggccagaccatggtcttccatctcggcatgtcgggtcgctgg
cggatcgagccggagcggccggaaaagcacgaccacctcgtgatcgaaacgggctccggc
catgtccttgcactcaacgacgcccggcgtttcggctcggtcgaccttgtcgccacggat
gggctggagacatggggcccgttcgccgacatgggtccggaaccgctgggagacgcgctc
actgccgcgcacctgcgcgctgccttcaaggaccggaccgcgccgatcaagcagctcctg
ctcgaccagtcgatcgtggccggtctgggcaacatctatgtatgtgaggcgctgttccgg
tccggcatccgccctgacaaggcagcgggccgggtttccctggccgccctcgcccgcctc
gtcccggcgatccgcgaagtgctgaccgaatcgatcgcggccggcgggtcgaccattcgc
gactatgcgcagccgaccggcgagctgggttacttcgctacgtcctggcaagtctacggc
cgcgaggggcaagcctgcacctgcggcgcgccggtcctgcgcttcgtccagggtgggcgc
agcaccttctggtgcaggcgctgccagaagtag
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