Novosphingobium pentaromativorans: JI59_15485
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Entry
JI59_15485 CDS
T03399
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JI59_15485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
npn03021
]
JI59_15485
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_15485
Enzymes [BR:
npn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JI59_15485
Transcription machinery [BR:
npn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JI59_15485
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JI59_15485
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AIT81082
UniProt:
G6E9A8
LinkDB
All DBs
Position
3209152..3210210
Genome browser
AA seq
352 aa
AA seq
DB search
MTVNIKNWQELKKPNSLEIKPGPDPKLKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALRMQGEGPKRLQLSATGPAEVKAGDI
AVSGDIEVMNKDLVICHLDEGATLNMELTADTGKGYVPAVGNRPVDAPIGLIPVDSLYSP
VRQVSYKVENARIGQELDFDKLSLTVETDGTVTPEDAVAYSARILQDQLALFVHFEDIAP
VGAPQMIGMAAAQPEESDTNQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatcaagaactggcaggaactcaagaagccgaacagccttgagatcaag
ccgggaccagaccccaagctgaaggcgactttcgttgccgaacctctcgagcgcggcttc
ggcctgacgctgggtaacgcgctgcgccgtgttctgctctcctcgctgcagggtgcagcg
atcacctcgatcaagatcgagaacgtgcttcacgagttctcgtcgcttgccggcgtgcgt
gaggacgtcacggacatcgtcctgaacgtcaagcagatcgcgctcaggatgcagggcgaa
ggccccaagcgcctgcagctttcggccaccggcccggcagaggtcaaggctggcgatatc
gccgtctcgggcgacatcgaggtcatgaacaaggacctcgtgatctgccacctcgacgag
ggtgcgacgctgaacatggaactgactgccgacaccggcaagggctacgtccctgccgtc
ggcaaccgtcccgtcgatgcaccgatcggcctgatcccggtcgactcgctctactcgccg
gtccgtcaggtcagctacaaggtcgagaacgcccgtatcggccaggagctggacttcgac
aagctgagcctgaccgtcgagaccgacggcacggtgaccccggaagatgccgtggcctat
tcggcgcgcatccttcaggaccagcttgccctgttcgtccacttcgaggacatcgccccg
gtcggcgctccgcagatgatcggcatggccgctgcgcagcccgaggaaagcgacaccaac
cagctcaaccgttacctcctcaagaaggtcgacgagcttgaactgtcggtgcgttcggcg
aactgcctcaagaacgacaacatcatctacatcggcgatctcgtgcagaagaccgaggcc
gagatgctccgtacgccgaacttcggccgcaagtcgctcaacgagatcaaggaagtcctt
tcctcgatgggcctgcgcctcggcatggacatcccgggctggccgcccgagaacatcgaa
gagatggccaagaagctcgaacaggagctccttggataa
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