Novosphingobium pentaromativorans: JI59_19185
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Entry
JI59_19185 CDS
T03399
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI59_19185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npn03019
]
JI59_19185
03009 Ribosome biogenesis [BR:
npn03009
]
JI59_19185
Enzymes [BR:
npn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JI59_19185
Messenger RNA biogenesis [BR:
npn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JI59_19185
Ribosome biogenesis [BR:
npn03009
]
Prokaryotic type
rRNA processing factors
JI59_19185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AIT81737
UniProt:
G6E7N5
LinkDB
All DBs
Position
complement(3926370..3929219)
Genome browser
AA seq
949 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESTERKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKEDREALLAEEAAHAEEEAALRARDGDDEDDDENGNDG
EDFDDGGLTEVDTSEKDEVATIEDGNVENGFDHGSEEEGETSEDEHGGSRRRGRRRQGKG
RSKEADELRAKRIALRRRYKIQDVIHRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVL
MPNSSHGGGISRKISSASDRKRLKSIIAELELPRSMGCIVRTAGLQRTKTEIKRDFDYLA
RLWDELREKTLGSAAPSLIHSDSDLVKRAIRDIYNREIEEVVVEGEEGYRAAKDFMKLLM
PSHARRVKPYSDPVPLFQRYGAEDQLTAMYDPVVQLRSGGYIVINPTEALVSIDINSGRA
TKEHGIEQTAVATNLEAAQEIARQLRLRDMAGLVVIDFIDMEYGSNVRKVEKAMKDALKN
DRARIQVGRISSFGLMEMSRQRLRTGVLEATTRSCPHCDGTGLVRTASSAGLSALRLIED
EAAKGKGVVVSLFASTEAAVYLLNAKRTDLADIEARYGVAVEVIPEGENEGAKMRVISSG
PRNEFVPRFEPIAVEVEDDDIPEDDEDEIEREDAEARSEGEGRRKRRRRRRGRNRDRRDE
QSGDESAETEASESAENDNEGEETFAGGDDEEGDAPRKRRRRGGRRRRGRRGDEAGEQTE
GEAGDDSQGSHEDADVAEAPAEAEAPIEATPVAEAEPEVEEAPKPKKRTRRKKAEPRPEA
AEAAVEEAPEAVAAEAPAEETPVAEEAPAKPKRTRRKKAEPKPEAEAAEAPAEDAPAAEE
APAKPKRTRRKKAEPKPEAEVVEAAAEDAPAAEEAPAKPKRTRRKKAEPKPAEEAGPVAV
EAAAPEAAPVEAAPAGEEVTADASSGDEAANDESAERPRRGWWQRTFGE
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctcatcgatgcgcgccacccggaagaaacgcgggtggcggtactc
aagggaaatcgcattgaagagttcgatttcgaatcgaccgaacgcaagcagataaaaggc
aacatctacctcgcgaaggtgacccgtgtggaaccttcgctgcaggctgccttcgtcgac
ttcggaggaaaccgtcacggcttcctcgccttcagcgaaattcatcccgactactaccag
attccgaaggaagaccgcgaagcgcttctggccgaagaagcggcccatgccgaagaagaa
gccgccctgcgcgcccgtgacggcgacgatgaggacgacgacgagaacggcaacgacggc
gaagacttcgacgatggcggccttaccgaagtcgacacatccgaaaaggacgaagtcgcc
accatcgaggatggcaacgtcgagaacggcttcgaccacggcagcgaggaagaaggcgaa
acgtcggaagacgagcacggcggttcgcgccgtcgcggtcgccgccgccagggcaagggc
cgttcgaaggaagccgacgaactgcgcgccaagcgcatcgccctgcgccgccgctacaag
atccaggacgtcatccaccggcgccaggtcctgctggtgcaggtcgtcaaggaagagcgc
ggcaacaagggcgcggcgctgaccacgtacctcagccttgctggccgttactgcgtgctc
atgccgaactcgagccacggcggcggcatcagccgcaagatcagctcggcctcggaccgc
aagcgcctcaagtcgatcattgcagagcttgagctgccgcgttcaatgggctgcatcgtg
cgcaccgccggcctccagcgcaccaagaccgagatcaagcgcgacttcgattacctcgcg
cgtctctgggacgaactgcgcgaaaagacgctcggctcggccgctccctcgctgatccat
tcggacagcgacctcgtgaagcgcgcgatccgcgacatttacaatcgcgagatcgaggaa
gtcgtggtcgagggcgaggaaggctaccgcgccgccaaggacttcatgaagctgctcatg
cccagccatgcgcggcgggtgaagccctattccgacccggttcctctgttccagcgctat
ggcgccgaagaccagcttaccgcgatgtacgaccctgtcgtgcagcttcgctcgggcggc
tacatcgtcatcaacccgaccgaagcgctcgtttcgatcgacatcaactcgggccgcgcc
accaaggagcacggtatcgagcagacggcggtcgccaccaatctcgaagcggcccaggaa
atcgcccgtcagttgcgcctgcgcgacatggccggactcgtcgtgatcgacttcatcgac
atggagtacggctccaacgtccgcaaggtcgagaaggcgatgaaggacgcgctcaagaac
gaccgggcacgcatccaggtcggtcgcatctccagcttcggcctgatggaaatgagccgc
cagcgcctgcgcaccggcgttctggaagcgaccacccgctcctgcccgcattgcgacggt
accggcctcgtgcgtaccgccagctcggcaggtctctcggcgctgcgcctgatcgaggac
gaagcggccaagggcaagggcgtggtcgtctcgctcttcgcgtcgaccgaggctgcggtc
tatctgctcaatgccaagcgcacagaccttgccgacatcgaggctcgctacggcgtggca
gtcgaagtcattccggaaggcgagaacgaaggcgccaagatgcgcgtcatctcgtcgggg
ccgcgcaacgagttcgtgccccgcttcgagccgatcgccgtcgaggtcgaggatgacgac
atccctgaggatgacgaggacgagatcgagcgcgaggacgcagaagcccgctccgagggc
gaaggccgccgcaagcgtcgccgtcgccgtcggggtcgcaatcgcgaccgtcgtgacgag
cagtcaggcgacgaaagcgccgaaaccgaagcctccgagagcgccgaaaacgacaacgag
ggcgaagaaaccttcgccggcggtgacgatgaggaaggcgatgcgccccgcaagcgccgc
cgccgtggcggtcgccgcaggcgcggacgccgcggcgacgaggcaggcgagcagaccgag
ggtgaagccggcgacgacagccagggttcgcacgaggatgcagacgttgccgaggctcct
gccgaagccgaagctccgatcgaggccactccggtagccgaggccgagcctgaggttgag
gaggctcccaagccgaagaagcgcacgcgccgcaagaaggccgagcctaggcccgaagca
gccgaagccgcagttgaggaagcgcctgaagcagtcgctgccgaagctccggccgaggaa
actccggttgccgaggaagcgccggccaagcccaagcgcacccgccgcaagaaggccgag
cccaagcccgaagccgaagcggccgaggctcccgctgaggatgcccctgctgccgaggaa
gcgccggccaagcccaagcgcacgcgacgcaagaaggccgagcccaagcccgaagccgaa
gtggtggaagcagccgcagaggacgcccctgccgccgaggaagctccggcaaagcccaag
cgcacccgtcgcaagaaggccgagcccaagcccgccgaggaagcagggccggtcgcagtt
gaggccgctgcgcctgaagcggcgcccgtcgaagccgcccctgccggcgaggaagtgact
gcggacgcatcgtcaggtgacgaagcagccaatgacgagagcgccgagcgcccgcgtcga
ggctggtggcagcgcacgttcggcgaataa
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