KEGG   Nyctereutes procyonoides (raccoon dog): 129497382
Entry
129497382         CDS       T09008                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
npo  Nyctereutes procyonoides (raccoon dog)
Pathway
npo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:npo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129497382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:npo03041]
    129497382
Spliceosome [BR:npo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    129497382
 Complex C
   U5 SnRNP specific factors
    129497382
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 129497382
NCBI-ProteinID: XP_055162199
LinkDB
Position
Unknown
AA seq 354 aa
MIEQQKRKSPELPLVPVKRQRHELLWGVAGSGPGAGQQQTALQAGPPRCSSLQAPIMLLS
GHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDRDNYATLKGHSGAVMELHYNTDGSM
LFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRK
KAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSL
SSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAG
SADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgatagaacagcaaaagcgcaaaagcccggagttgccactggtcccagtcaagcggcag
cggcatgagttgctgtggggagtggcggggtcgggccccggagctgggcagcagcagacg
gcgctacaagcgggacctccaaggtgttcctcccttcaggctccaatcatgcttctctca
ggacatgaaggggaagtgtactgctgcaagtttcatcccaatggatccaccttagcatct
gcaggctttgatcgactgatactgttgtggaatgtctatggtgaccgtgataactatgct
acattgaaaggacacagtggggctgtgatggagctgcattataacacggatggcagtatg
ctgttctctgcatccacagataaaactgtggcagtgtgggatagtgaaacaggtgagagg
gttaaaaggctgaaaggacatacttcctttgtgaattcctgttatccggccaggaggggc
cctcagcttgtctgcactggaagtgatgatggaacagttaagctttgggacatccggaag
aaagcagccatccagacatttcagaacacctatcaggtgttagctgtgaccttcaatgat
acaagtgatcagattatttctggtggaatagacaacgatatcaaggtctgggacttgcgc
caaaacaagctaacctacaccatgagaggccatgcagattcagtgactggcctgagttta
agttctgaaggctcttatctcttgtccaatgcaatggacaatacagtgcgggtctgggat
gtccggccatttgctcctaaagagagatgtgtgaagatatttcaaggaaatgtgcacaac
tttgagaagaatcttctgagatgttcttggtcacctgatggaagcaagatagcagctggt
tcagctgacaggtttgtgtatgtgtgggataccacaagccggaggattttgtataagctg
cctggacatgctggctccatcaatgaagtggctttccaccctgatgaaccaatcattctc
tcagcatccagtgacaagagactgtatatgggggagattcagtga

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