Nyctereutes procyonoides (raccoon dog): 129500402 Help Entry 129500402         CDS       T09008                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism npo  Nyctereutes procyonoides (raccoon dog) Pathway npo03030   DNA replication npo03410   Base excision repair npo03420   Nucleotide excision repair npo03430   Mismatch repair Brite KEGG Orthology (KO) [BR:npo00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     129500402 (LIG1)    03410 Base excision repair     129500402 (LIG1)    03420 Nucleotide excision repair     129500402 (LIG1)    03430 Mismatch repair     129500402 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:npo03032]     129500402 (LIG1)    03400 DNA repair and recombination proteins [BR:npo03400]     129500402 (LIG1) Enzymes [BR:npo01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      129500402 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      129500402 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      129500402 (LIG1) DNA replication proteins [BR:npo03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     129500402 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      129500402 (LIG1) DNA repair and recombination proteins [BR:npo03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      129500402 (LIG1)    NER (nucleotide excision repair)     Other NER factors      129500402 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      129500402 (LIG1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDR PucR Motif Other DBs NCBI-GeneID:  129500402 NCBI-ProteinID:  XP_055166783 LinkDB All DBs Position Unknown AA seq 913 aa AA seqDB search MQRSIMSFFYPKKEGKMKKPEKETSNSIRETEPPPKVALKERNGEVPESDSPVKRPGRKV ARVLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTYPESSPSLSSTSPVDISAGIPKR RTARKQLPKRTIQDVLEEQSKDEDREAKKKKEEEAETPPESLSEPEVTQEKEAEGEDQPV TSPEHRETSPEPPVDSTLEPAVSGKQEAQKEDSAKLPTRAPKTVSSFFAPRKPATKKEGK EEDPGTPRQEETKGPLDPPSYNPAKNNYHPIDDACWKPGQKVPYLAVARTFEKIEEVSAR LRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQ LDSVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAGVFAKFRDIARLAGSASTAKKID VIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPLAVVDAGK GRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLA HPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRI PKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYL NGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVK TLDIDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDE ESEELQAICKLGTGFSDEELEEHYQRLQALVLPTPRSYVRVDGAVAPDHWLDPSAVWEVK CADLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKKPEEATTSGQVACLYMKQSQIQN QQGADLDSDSDFY NT seq 2742 nt NT seq  +upstreamnt  +downstreamnt atgcagcggagtatcatgtcatttttctaccccaagaaggagggcaaaatgaaaaagcca gagaaggagacctctaacagcatcagagagacagagccacctccaaaggtggcactgaag gagcggaatggagaggtgcctgaaagcgattctccagtgaagaggccagggcggaaggtg gcccgggtcctgggcagtgaaggggaggaggaggacgaagccctcacgccatccaaaggc cagaaacctgccccaggctctccacaagtctcccctcccagccctgtcacatatcccgag agcagcccttccctctccagtacctctcctgtggacatctcagcagggatcccaaagcgg cgcacagctcggaagcagcttcctaagcggacaatacaggatgtcctggaagagcagagc aaggatgaggacagagaggccaagaagaagaaggaggaagaagcagagaccccaccagaa agcctctcagagcctgaagtgacccaagagaaggaggcagaaggggaggaccaacctgtg acatcccctgagcaccgagagacctccccagagcccccggtggatagcacgttggagcct gcggtgtctgggaagcaggaggctcagaaggaggactcagctaagctgcccaccagagcc cccaagacggtcagcagcttctttgccccgcggaaaccggcaaccaagaaagaagggaaa gaagaggaccctggcactccaaggcaggaggagaccaagggacccctggaccctcccagc tacaatcctgccaagaacaactaccatcccattgatgatgcatgctggaagccaggccag aaggtcccttacctggctgtggcccggacatttgagaagattgaggaagtttctgctcgg ctccggatggtggagacgctgagcaacttgctgcgctctgtggtggccctgtcacctccg gacctcctccctatcctctacctcagcctcaaccgtcttgggccgccccagcagggtctg gaacttggtgtcggtgatggtgttctcctcaaggcggtggcccaggccacagggcggcag ctggactctgttaaggctgaggcagctgagaagggtgacgtggggctggtggccgaaaac agccgcagtacccagaggctcatgctgcccccacctgctctcaccgctgccggggtcttc gccaagttccgagacattgcccggcttgctggcagtgcctccacagccaagaagatagat gtcatcaaaggcctcttcgtcgcctgccgccactcagaagcccgattcattgccagagcc ctgagtggacggctgcgcctcgggctggcagagcagtcggtgctggccgccctctcccag gccgtgagcctcacgcccccaggccaagaattccccctggccgttgtggatgctgggaag ggccggacggcagaagcccgaaagacatggctggaggagcaaggcatgatcctgaagcag acgttctgcgaggtgcccgacctggaccggatcatccctgtactgctggagcatggcctg gagcacctccccgagcactgcaggttgagcccaggggttccactgaaaccaatgctggcg caccccacccggggtgtcagcgaggtcctaaaacgttttgaagaggcagctttcacctgc gagtacaaatacgatgggcagagggcacagatccacgttctagaaggtggggaggtgaag atcttcagcaggaatcaggaagacaataccggaaagtacccagacatcatcagccgcatc cccaagattaaactcccgtcagtcacgtccttcattttggacacagaagctgtggcatgg gaccgggaaaagaagcagatccagccattccaagtgctcaccacccgcaaacgcaaggag gtggatgcagcagagatccaggtgcaggtgtgtctatatgccttcgacctcatttacctc aatggagagtccctggtacgtgagcctctctcccgacgccggcagctgctccgggagaac tttgtggagacagagggcgagtttgtgtttgccacctccctggacaccaaagacacggac caaattgccgagttcttggagcagtctgtgaaagactcctgtgaggggctgatggtgaaa actctggacatcgatgccacctatgagatcgccaagagatcccacaactggctcaagctg aagaaggactacctcgatggtgtgggcgacaccctggacctcgtggtgattggcgcctac ctgggccgtggcaaacgggctggccgctatgggggcttcctactggctgcctacgacgag gagagtgaggagctccaggccatatgcaagctcggaactggcttcagtgacgaggaactg gaggagcactaccagaggctccaggccctggtgctgcccaccccacgctcctatgtccgg gtcgacggtgccgtggcccccgatcactggctggaccccagcgccgtgtgggaggtgaag tgtgcggatctgtccttgtcgcccatctaccctgctgcccggggcctggtggatagtgag aaggggatctcccttcgctttcctcggtttgtccgcgtccgtgaagacaagaagccagag gaggccaccaccagtggccaggtggcctgcctgtacatgaagcagagtcagattcagaac cagcagggcgcggacttagactctgactcagatttctactag

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