Nyctereutes procyonoides (raccoon dog): 129504156
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Entry
129504156 CDS
T09008
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo04140
Autophagy - animal
npo04142
Lysosome biogenesis
npo04145
Phagocytosis
npo04148
Efferocytosis
npo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
129504156 (VPS39)
04142 Lysosome biogenesis
129504156 (VPS39)
04140 Autophagy - animal
129504156 (VPS39)
04148 Efferocytosis
129504156 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129504156 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
npo04131
]
129504156 (VPS39)
Membrane trafficking [BR:
npo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
129504156 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
Beta-prop_WDR36-Utp21_1st
DUF4145
Lgl_C
SAM_CEP-1_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
129504156
NCBI-ProteinID:
XP_055172676
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKEDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLMFLEIS
GYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILNDTKMAEEYCHKHYDQNR
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccagtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaagaatggcttcttgttggcaccaaacaaggacatcttcttctctat
aggatccgaaaggatgctggttgcaacaggtttgaagtgacactagagaaatccaataaa
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttatgtccatgacctattgacctttcaacaaatcaccacagtt
tcaaaggcaaagggagcatcactattcacatgtgacctccaacacacagagactggtgag
gaggtattgcggatgtgtgtggccgtgaaaaagaagctgcagctctatttctggaaggat
agggaatttcatgaattgcagggggactttagtgtaccagatgtgcccaagtctatggca
tggtgtgaaaactctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaagggtccatcaaagagctctttccaacaggaaaacaactggagccgttagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaaatgtgccttgaattggacagacatcccagtggccatggag
caccagcctccctacatcattgcagttttgcctcgatatgtggagatccgaacatttgag
ccaaggcttctggtccagagcattgaattgcaaaggccccgcttcattacctctggagga
tcaaacataatctatgtggctagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctacagctcgca
gaaatgaaagaagattctgacagcgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctgtacccagacctgctgcccacagactac
agaaagcaactgcagtatcctaacccactgccagtgctgtcgggggctgaattggagaag
gcacatttagctctgattgactacctgacacagaaacgaagccaattggtaaagaagctg
aatgactctgatcaccagtctagcacctcccctctcatggaaggcactccgaccatcaaa
tccaagaagaagctattgcaaatcattgataccaccctgctcaagtgctacctccatacg
aacgtggccttggtggcgcctctgctgcgcctggagaacaatcactgccacatcgaggag
agtgagcatgtgctgaagaaggcgcacaagtacagtgaactgataatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactcc
cctctgaaaggccatgagaggacagtgcagtatctgcaacatttgggcacagaaaacctg
catttgattttttcctactcagtatgggtgctgcgagacttcccagaggatggcctgaag
atatttaccgaagacctcccggaggtggaatctctgccacgagaccgagtgctaggcttc
ttagtggagaattttaagggtctagctattccttatctggagcatgtcattcacgtttgg
gaggagacaggctctcgattccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctatccttccctgcaggcaaaactccagtccctgctgga
gaggaagagggtgagctgggagagtaccgacggaagctccttatgttcttggaaatttct
ggctactatgatccaggccggctcatctgtgactttccttttgatggcctcttagaagag
cgtgcactgctgctggggcgcatgggaaagcatgagcaagcgctcttcatctacgtgcac
atcctgaacgacacaaagatggctgaggagtactgccacaagcattacgaccaaaacaga
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcgccccctagtgtt
cattgcctgggacccatcaaactggaactgctggagccacaggccaacctccaggccgcc
ctgcaggtcctcgagctgcaccacagcaagctggacaccactaaggccatcaaccttcta
ccagcaaacactcagattaatgacatacgtatctttctggaaaaggtcttggaagaaaat
gcacaaaaaaaacggttcaatcaagtgctcaagaacctcctccatgcagaatttctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgtatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagccgacacctga
DBGET
integrated database retrieval system
