Nyctereutes procyonoides (raccoon dog): 129508558
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Entry
129508558 CDS
T09008
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
129508558 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npo03400
]
129508558 (LIG3)
Enzymes [BR:
npo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129508558 (LIG3)
DNA repair and recombination proteins [BR:
npo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
129508558 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
129508558
NCBI-ProteinID:
XP_055179417
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MNLERREDTICMTLAFKILFPPTFRALRRKELCLFREPHHWPDVRQFSHWSERDLLHGSC
LLQRRKPVLSFQEGSLRPRATCLVFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKC
KEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEE
LEDNEKEQISQHIADLSSKATGTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSG
FSAKPNNSGEARSSPTPKASLSSSRCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQD
FLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNADDMARDLEQG
DVSETIRVFFEQSRTFPPAAKSLLTIQEVDKFLLELSKLTKEDEQQQALQDIASRCTAND
LKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQR
RALSVQASLMTPVQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSR
SLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDA
NVCLFVFDCIYFNDVSLMDRPLSERRKFLHDNMVEIPNRIMFSEMKQVTKASDLVDMINR
VIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADMADLVVLGAFYGQGSKGGMM
SIFLMGCYDPSSQKWCTVTKCSGGHDDATLARLQKELDMVKISKDPSKIPNWLKINKIYY
PDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKEL
YQLSKEKADFTVAAGEEGSSTTGGSSSGENGGVSGPAGARKAKKVGGRPSSPNDRGGHKL
IAKPSPVKVGQKRKAPDEASCPAKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQ
EFDMASATHVLGSGDKNPEAQQVSPEWIWACIRKRRLVAPC
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagaaaggcgggaggacaccatctgtatgactttggctttcaagatcctcttc
ccaccaaccttccgcgcactcaggcgaaaagaattgtgcctgttccgagagccacatcac
tggcctgacgtaagacagttcagccattggtcagaaagagatctgcttcatgggtcctgc
ctcctccagagaagaaagcctgttctgtcattccaggaaggcagtctaagaccacgtgcc
acctgccttgtttttttgccagggtcgcatgtgggactctgcagtgggccctgtgagatg
gctgagcaacggttctgtgtggactatgccaagcgtggcacggctggctgcaaaaaatgc
aaagaaaagattgtgaaaggtgtatgccggattggcaaagtggtgcccaatcccttctca
gagtccgggggtgatatgaaagagtggtatcacattaaatgcatgtttgagaaattggag
cgggcccgggccaccacaaaaaaaattgaggacctcacagagctggaaggctgggaagag
ctggaagataatgagaaggaacagataagccagcacattgcagatctgtcttctaaggca
acaggaacaccaaagaagaaagctgtcgtccaggctaagctgacagccactggccaggtg
acctctccagtgaaaggtgcctcatttgtcaccaataccaatccccggaaattttctggt
ttttcagccaagcccaacaactctggggaagcccgctcaagccctacccctaaggcaagt
ttgtcctcaagcagatgtgatcccaagcacaaggattgtctgctacgtgagtttcggaag
ctgtgtgccatggtggctgagaatcctagctacaacacgaagacccagatcatccaggac
tttcttcggaaaggttcagcaggagatggtttccacggtgacgtgtacctaacagtgaag
ctgctgctgccgggtgttattaagagtgtttacaacttgaatgataagcagattgtgaag
cttttcagccgcatttttaattgcaacgcagatgatatggcacgggacctagagcagggc
gacgtgtcagagacaatcagagtcttctttgagcagagcagaactttccccccagctgcc
aagagccttcttaccatccaggaggtggacaaattcctccttgagctctccaagctcacc
aaagaggatgagcagcaacaggccctgcaggacatcgcctccaggtgtacagccaatgac
cttaagtgcatcatcagattgatcaaacacgatctgaagatgaactcgggtgcaaaacac
gtgttagatgcccttgaccccaatgcctatgaagccttcaaagcctcacgcaacctgcag
gatgtggtcgagcgggtcctccgcaacgagcaggaggtggagaaggagccaggccagaga
cgagctctgagtgtccaggcttctttgatgacgccagtgcagcccatgctggccgaggcc
tgcaagtccatcgagcatgcgatgaagaagtgtcctaacggcatgttttccgagatcaag
tacgatggggaacgagtccaggtgcataagaacggagatcacttcagctacttcagccgc
agccttaagcctgtgctgcctcacaaggtggcccactttaaggactacatcccccaggct
ttccctgggggccacagcatgatcttggactccgaggtgctcctgatcgacacgaagaca
ggcaaaccgctgccctttgggactcttggagtgcacaagaaagctgccttccaggatgct
aatgtctgcctttttgtttttgattgtatctacttcaatgatgtcagtttgatggatagg
cctctctctgagcgccggaagtttcttcacgacaacatggtggaaattcccaaccggatc
atgttctcagaaatgaagcaagtcactaaagcttcagacttggtcgacatgataaaccgg
gtcatccgagaggggctggaagggctggtgctgaaggacgtgaagggtacctatgagcct
ggaaagcggcactggctgaaagtgaagaaagactatttgaatgagggggccatggctgat
atggcggacctggtggtccttggggccttctatgggcaagggagcaaaggtggcatgatg
tccatcttcctcatgggctgctatgacccaagtagccagaagtggtgcacggtcaccaag
tgttcaggaggccatgatgatgcgacccttgcccgcctgcagaaggaactggacatggta
aagatcagcaaggatcccagcaaaatacccaactggctgaaaatcaacaagatctactat
cctgacttcatagtcccagacccaaagaaagctgctgtgtgggaaatcacgggggctgag
ttctccaggtctgaggctcacacggccgatgggatctccatccgattccctcgttgtacc
cggatccgtgacgataaggactggaaatctgccactaaccttccccagctcaaggaactg
taccagctgtccaaggagaaggcggatttcactgtggccgctggagaggagggaagctcc
accacagggggcagcagcagcggagagaacgggggtgtctcagggcctgctggggctcgc
aaggccaagaaggtgggagggaggccgagtagccccaatgacagaggcggccacaagttg
atagccaaaccttcccctgtgaaagtggggcagaagcggaaggctcccgatgaggcttca
tgcccagcaaaggtgctgctggacatcttcactggcgtgcggctctacctgccaccctcc
acgccagacttcagccgtctcagacgctactttgtggcattcgatggggacctggtgcag
gaatttgacatggcatcagccacacatgtgctgggtagcggggacaagaaccctgaggct
cagcaggtctccccggagtggatttgggcgtgtatccggaaacgaaggctggtagctccc
tgctag
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integrated database retrieval system
