Nyctereutes procyonoides (raccoon dog): 129508799
Help
Entry
129508799 CDS
T09008
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5 isoform X1
KO
K11125
protein SMG5
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129508799 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npo03019
]
129508799 (SMG5)
03032 DNA replication proteins [BR:
npo03032
]
129508799 (SMG5)
Messenger RNA biogenesis [BR:
npo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129508799 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
129508799 (SMG5)
DNA replication proteins [BR:
npo03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129508799 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
129508799
NCBI-ProteinID:
XP_055179890
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MSQGPPPGESSEPEAKVLHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLR
ELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGIG
FYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLMYLGD
LSRYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQ
SEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVNFMYLQSLLQP
RSSPVDSELTSLCQSVLEDFNLCLFYLPSSPSLSLASEGEEDYESGYAFLPDLLIFQMII
ICLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDE
PLEKEEAPDPEPPPAAPQATEVRKSRKFSRLSCLRRRRHPPKAGDDSDLSEGFESDSSRD
SARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESRSDLEDIEDEEGTRSPALEPPRPR
SEAPESLNGPLGPSEASIASNLQAMSTQMFQTKRCFRLAPTFSNLLLQPSTEPHTVANRR
SCVNGDADKPSEPASEEGSESEGSESSGHSCRNERSVQEKLQVLAAEGLLPAVKVFLDWL
RANPDLIVVCAQSSQSLWNRLSVLLNLLPAAGELQESGLALCPEVQDLLEGCELPDLPSS
LLLPEDTALRNLPPLRAAHRRFNFDTDRPLLNALEESVVRICCIRSFGHFIAHLQGSILQ
FSAEAGIFVSIAQSEQEGVLQQAQAQFRMAQEEARRNRLMRDMAQLRLQLEVSQLEGSLQ
QPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGRFIVIIPRTVIDGLDLLKKEHPGARDG
IRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQDADAWTLYKILDSCKQLTLAQGAGEED
PSGMVTIVTGFPLDNPSALSGPMQAALQAATHASVDIKNVLDFYKQWKEIG
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaggcccccccccaggggagagcagcgagcccgaggcgaaggtcctccatacc
aagcggctttaccgggctgtggtggaggctgtgcatcgactcgacctcatcctttgcaac
aaaaccgcttatcaagaagtgtttaaaccagagaacattagcctgaggaacaagctgcgt
gagctctgcgtcaagcttatgttcctgcacccagtagactatgggagaaaggctgaggag
ctgctgtggagaaaggtgtactacgaagttattcagcttatcaagacgaataagaagcac
atccacagccggagcaccttggaatgtgcctacaggacgcacctggttgctgggattggc
ttctaccagcatctgctgctctacatccagtcccactaccagctggagcttcagtgctgc
atcgactggacccatgttactgatcccctcataggatgcaagaagccagtgtctgcgtca
gggaaggagatggactgggcacagatggcctgccaccgatgtctcatgtacctgggggat
ttgtcacgatatcagaatgaattagctggcgtagacactgagctgctagctgagagattt
tactaccaagccctgtctgtagctccccagatcggaatgccctttaaccagctgggcacc
cttgcaggcagcaagtactacaacgtggaagccatgtactgttacctgcgctgcatccag
tcggaagtgtccttcgagggggcctatgggaatctcaagcggctgtatgacaaggcagcc
aagatgtaccaccagctgaagaagtgtgagactcggaaactgtctcccagcaagaagcgc
tgtaaagacatcaagaggttgctggtaaactttatgtaccttcaaagcctcctgcagccc
aggagcagcccggtggactcagagctgacctcactctgccagtcagtcctggaggacttc
aatctctgcctcttctacctgccatcctcacccagcctcagcctggccagtgagggtgaa
gaggactatgaaagtggctatgccttcctcccagacctcctcatctttcagatgatcatc
atttgtctcatgggtgtgcatagcttgaagagagcagggtccaaacagtacagtgcagcc
attgcctttaccctggccctcttctcccacctcgtcaaccatgtcaatatacggctgcag
gctgagctggaggagggtgagaatcctgtgccggcgttccagagcgatggcacagatgag
cccttggagaaggaggaggcgccagaccctgagccccctcctgcagcacctcaagcaact
gaggtcagaaagagccggaagttctctcgcctctcctgcctccgccgccgccgccaccca
cccaaagctggagatgacagtgacctgagtgaaggctttgaatcagactcgagccgtgac
tcagccagggctagtgagggctcagacagtggctccgacaagagtctcgaaggtggggga
acagcctttgatgctgagacagactcagaaatgaacagccaagagtcccggtcagacctg
gaagacattgaggatgaggagggtactcggtccccggccctggagccccctcggcccagg
tcggaggctcccgagtctctcaatggcccactgggccccagtgaggcgagcattgccagc
aatctacaggccatgtccacgcagatgttccagaccaagcgctgcttccgactggcgccc
accttcagcaacctgctcctccagccttccactgagccccatactgtagccaaccgcagg
tcatgtgtcaatggagatgcagacaagccttcggaaccagcctccgaggagggctccgag
tcggagggcagtgaatctagtgggcactcctgtcggaatgagcgcagtgtccaggagaag
ctgcaagtcctggcagccgaaggcctgcttcctgccgtgaaggtcttcctggactggctg
cgggccaaccctgacctcatcgttgtgtgtgcacagagctctcaaagtctgtggaatcgc
ctgtctgtgttgctgaacctgttgccagctgctggtgagctccaagagtctggcctggcc
ctgtgtcccgaggtccaggacctacttgaaggttgtgaactgcctgacctgccctccagt
ctgctgctcccagaggacacggcccttcgtaacctgcctcccctccgggctgcccataga
cgcttcaactttgacacagaccggcccctgcttaacgccttagaggagtcagtcgtgcgc
atctgctgcatccgcagctttggccacttcatcgcccacctgcagggcagcatcctgcag
ttcagcgcagaggctggcatctttgtcagtatcgcccagtctgagcaggagggcgtgctg
cagcaggcccaggcgcagttccgcatggctcaggaagaggcccgtcggaacaggctgatg
agagacatggcccagttgcgacttcagctcgaggtctctcagctggaagggagcctgcag
cagcccaaggcccagtcagcaatgtctccctacctcgtcccggacacccaggccctctgc
caccacctcccggtcatccgccagctggccaccagtggccgcttcattgtcatcatccca
aggacagtgattgatggcctggatttgctgaagaaggaacacccaggggcccgggatggg
atccgatacctggaggcagagtttaagaaaggaaacaggtacattcgctgccagaaagaa
gtaggaaagagcttcgagcggcataagctgaagaggcaggatgcagatgcctggacgctc
tataagatcctggacagctgcaaacagttgactttggcccagggggcaggtgaggaggac
ccaagcggcatggtgaccatcgtcacaggctttccactggacaaccccagtgcgctctca
ggccccatgcaggcagccctgcaggccgctacacatgccagtgtggacatcaagaatgtt
ctggacttctacaagcagtggaaggagattggttga
DBGET
integrated database retrieval system
