Nyctereutes procyonoides (raccoon dog): 129512614
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Entry
129512614 CDS
T09008
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03013
Nucleocytoplasmic transport
npo03015
mRNA surveillance pathway
npo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129512614 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
129512614 (DDX39B)
03015 mRNA surveillance pathway
129512614 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npo03019
]
129512614 (DDX39B)
03041 Spliceosome [BR:
npo03041
]
129512614 (DDX39B)
Enzymes [BR:
npo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129512614 (DDX39B)
Messenger RNA biogenesis [BR:
npo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129512614 (DDX39B)
Spliceosome [BR:
npo03041
]
Complex C
Other components
EJC/TREX
129512614 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129512614 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129512614
NCBI-ProteinID:
XP_055185998
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MRSPCSALLSQTRVFFFFLTVAPAPTLLLCFYLLCVNPSRDPSPSPPAGPVMAENDVDNE
LLDYEEDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPS
EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI
SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH
IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI
FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE
QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD
TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcgccttgctcagctcttctatcacaaactagggtattttttttttttttaact
gttgctccagcccccactctcctcctctgtttttacttactctgcgtgaacccatccaga
gacccatctccttctccccctgccggcccagttatggcagaaaatgatgtggacaatgaa
ctcttggactatgaagaagatgaagtagagacagcagctgggggagacgggtctgaggcc
cctgccaagaaggatgtcaagggttcctacgtctccatccacagctctggctttcgtgac
ttcctgctgaagccagagttgctccgggccattgttgactgtggctttgaacatccatca
gaagtccagcatgagtgcatccctcaggccattctgggaatggatgtcctatgccaggcc
aagtcagggatgggaaagacagcagtgtttgtgctggccacactacaacagttggagcca
gttactggacaggtgtctgtgctggtgatgtgtcatacccgggagttggcatttcagatc
agcaaggagtatgagcgcttctctaaatacatgcccaatgtcaaggtcgcggtgtttttt
ggtggtctgtctatcaagaaggatgaagaggtgctgaagaagaattgcccgcatattgtt
gtggggacccctggccgcatcctcgccctggctcgaaataagagcctcaatctcaaacac
attaaacactttatcttggatgaatgtgataagatgcttgaacagctcgacatgcgtcgg
gatgtccaggaaatttttcgcatgaccccccatgagaagcaggtcatgatgttcagtgct
accttgagcaaagagatccgtcctgtctgccgcaagttcatgcaagacccaatggagatc
ttcgtggatgatgagacgaagctgacgctgcatgggttgcagcagtactacgtgaaactg
aaggacaacgagaagaaccggaagctctttgaccttctcgatgtccttgagttcaatcag
gtggtgatctttgtgaagtctgtgcagcgttgcattgccctcgcccagctgctggtagag
cagaacttcccagccattgccatccaccgagggatgccccaggaggagaggctttctcgg
tatcagcagtttaaagattttcaacgacgaattcttgtggctaccaacctatttggccga
ggcatggacattgagcgggtgaacattgccttcaactatgacatgcctgaggattctgac
acttacctgcatcgggtggcccgagcaggccggtttggcaccaagggcttggccatcaca
tttgtatcagatgaaaatgatgccaagatcctcaatgatgtgcaggatcgctttgaagtc
aatattagtgagctgccagatgagatagacatttcctcttacattgaacagacgcggtag
DBGET
integrated database retrieval system
