Nyctereutes procyonoides (raccoon dog): 129512999
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Entry
129512999 CDS
T09008
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129512999 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
npo03019
]
129512999 (SKIC2)
Enzymes [BR:
npo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129512999 (SKIC2)
Messenger RNA biogenesis [BR:
npo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129512999 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
129512999 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HAS-barrel
DUF3516
Motif
Other DBs
NCBI-GeneID:
129512999
NCBI-ProteinID:
XP_055186614
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
METEQLVLPPPDPLDLPLRPVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQL
FLSSPAWLPLHGVEHSVRKWQRKVDPWSLLATLGAPVPSDLQAQRHPNTGQILGYKEVLL
ENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFEQ
DLLTVPPGFKKGVDFAPKDHPTPAPGLLSLSHLLEPLDLGGGDEDETEAVGQPGIPRGDT
VSATPCSASLARASSLEDLVLKETSTAISPPEPPKPVPQEQWAIPVDVTSPVGDFYRLIP
QPAFQWSFEPDVFQKQAILHLERHNSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP
IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI
FDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV
ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP
THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASSLTSLDLTTSSEKSEIH
LFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFA
TETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKG
RVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKA
HEQALAELTKRLGALEEPDTTGQLVDLSEYYGWGEELTETRSLIQRRIMESVNGLKSLSA
GRVVVVKNQEYHNTLGVILQVSSNSASRVFTTLVLCDKPVSEDPQERAPATPDVPYPDDL
VGFKLFLPEGPCDHTVAKLQPGDVATITTKVLRVNGEKILEDFSKRQQPKFKKDPPIAAV
TTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIWGAQCVHSPRFS
AQYVKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVA
CAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQLPSTLKQGVERVRAV
AKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQ
RLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgagcaactcgtgctccctcctccagatcccctggatctaccccttcggccc
gtggagctgggatgcacagggcgctgggagcttctgaatgtgcctggggctccagagagc
acccttccccatggcctcccgccctgtgcgccagatctgcagcaggaagcagagcagttg
tttttgtcatctccagcctggttgcctctacatggtgtggagcactccgtccgaaaatgg
cagaggaaggtggatccttggtctctcctggccacactgggggccccagtgccctctgac
cttcaggcccaaagacacccaaacacaggccagatactgggctacaaagaggtcctgctg
gagaatacaaacctatcagctacaacctccttgtctcttcgccggcccccagggcctatc
tcccagtccctttgggggaatccaacacagtaccctttctggccaggtggaatggatgag
cccaccataacagatctgagtactcgggaggaggctgaggaggagatagactttgagcaa
gatcttcttacggttccacctggcttcaagaaaggtgtggactttgcaccaaaggatcac
ccaactccagctcctggcttgctcagcctcagtcatttgctggaacctctggatttgggt
gggggtgatgaggatgagactgaggcagtgggacagccaggaattcccagaggggacact
gtttcagccaccccctgcagtgcttccctggcccgagcaagcagcttggaggacctagtg
ttgaaggaaacatccacagctatatctcctccagagccccccaaacctgtgcctcaggag
cagtgggcgattcctgtggatgtcacctcccctgttggtgatttctaccgcctcattccc
cagccagccttccagtggtcgtttgagccggatgtgttccagaaacaagccattctgcac
ttggagcggcacaactccgtctttgtcgcagctcacacatctgcggggaagacagttgtg
gccgaatatgccattgcccttgcgcagaaacacatgacgcggaccatctacacatcaccc
atcaaggccctgagcaaccagaagttccgagactttcgaaacacatttggggatgtggga
ttgctcactggggatgtacagctgcacccagaggcctcctgtctcattatgacaacagag
atccttcgttccatgctgtacagtggctcagatgtcatccgggacctggagtgggtcatc
tttgatgaggttcactacatcaatgatgctgagcgtggggttgtgtgggaggaggtgctc
atcatgctccccgaccatgtatccatcatcctactgagtgctactgtccccaacgccctc
gagttcgctgactggatcgggcggctgaaacgtcgccagatctatgtgatcagcactgtt
gcccgccccgttcccttggagcattatcttttcacggggaacagccccaagacccagggg
gagctctttctgttgctggactctcgaggggccttccacacaaaggggtactatgcagct
gtggaggccaagaaggagcggatgagcaaacatgcccagacctttggggccaaacagccc
acacatcaggggggacctgcgcaggaccgaggagtgtacctatcccttctggcctccctt
cgcacccgcgcacagctgcccgtagtggtgttcaccttctcccggggtcgctgtgatgag
caagcgtcgagcctcacctctcttgatctcaccacgagctcagagaagagtgagattcac
ctcttcctgcaacgctgccttgctcgcctccggggctctgaccgccagctgcctcaggtc
ctacacatgtccgagcttttgcaccgtggcctgggtgtgcaccacagcggcatcctgcct
attcttaaagagatcgtggagatgctcttcagtcgaggcctggtcaaggtcttgtttgcc
acagagacctttgccatgggtgtaaatatgcctgcccgaacggtggtgtttgactccatg
cggaagcacgatggttctaccttccgtgatctgctccctggagagtatgtgcagatggca
ggccgtgcaggccggaggggcctggatcccacaggcactgtcatcctgctctgcaagggc
cgtgtgcctgagatggcagacctgcaccgcatgatgatggggaagccatcacagttgcag
tcccagttccgactcacgtacaccatgatcctgaacctgctgcgggtggacgccctcagg
gtggaagacatgatgaagagaagcttttccgagtttccatcccgcaaggacagcaaggcc
cacgaacaggctctagctgaactgaccaagagactaggggccttggaggaacctgacaca
actggccaactggttgacctgtctgagtattatggctggggggaggaactgacagagacc
cggagcttgatccagcgacgcatcatggagtctgtgaatgggctcaagtctctctcagcg
ggaagggtggtggttgtgaagaatcaggagtatcacaacacactgggtgtgatcctgcag
gtctcctcgaattctgccagcagggtatttacaaccctggtcttgtgtgataaacctgtg
tctgaggacccacaggagagggcgccagccacccctgatgtgccatacccggatgacctt
gtgggattcaagctgttcctgcctgaagggccctgtgaccacacagtggccaagctccag
cccggagatgtagccactatcaccaccaaggtgctccgagtgaatggggagaagatcttg
gaggacttcagcaagaggcagcaaccaaaattcaagaaggatcctcccattgcagccgtg
accactgctgtccaggaactgctgcgtctggctcaggcctacccagcaggacccccgacc
cttgaccctgtcaatgacctgcagctcaaggatgtgtctgtggtagagggggggctccgg
gcccggaagttggaggagctgatctggggggctcagtgtgtgcacagcccccgtttctct
gcccagtacgtgaagctgcgagagcgaatgcagatacagaaggagatggagcgcctgcgc
ttcctgctgtcagatcaatcactgctgctgctcccagagtatcaccagcgagtagaggtg
ctccgaaccctgggttacgtagatgaggcgggcaccgtgaagctggcagggcgggtggcc
tgcgccatgagcagccacgagctgctcctcactgagctcatgtttgacaatgctctgagt
gccctgcggccagaggagattgcagccctactctccggcctggtctgccagagccctggg
gaccctggggagcagctcccaagtaccctcaaacagggagtggaacgtgtccgggctgtg
gccaagcggattggtgaggtccaggtggcctgtggcctgaaccagacagtggaggaattt
gtcggggagctgaattttgggctggttgaggttgtgtacgagtgggcccgtggcatgccc
ttttccgagttggcggggctgtcagggacccctgagggcctggtggtccgctgtatccag
cgcctggctgagatgtgtcgctcgctgaggggggcagcccgcctggtaggtgagcctgtg
ctaggtgccaagatggagacggcagctaccctgctacggagggacatcgtctttgctgcc
agcctgtacactcagtga
DBGET
integrated database retrieval system
